SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13470 | AT | Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0042026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein refolding | SoyBase | N/A | ISS |
| GO:0044267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0356 | KOG | Mitochondrial chaperonin, Cpn60/Hsp60p | JGI | ISS | |
| PTHR11353 | Panther | CHAPERONIN | JGI | ISS | |
| PTHR11353:SF8 | Panther | RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT, RUBB | JGI | ISS | |
| PF00118 | PFAM | TCP-1/cpn60 chaperonin family | JGI | ISS | |
| UniRef100_I1MJ28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ28_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P08927 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RuBisCO large subunit-binding protein subunit beta, chloroplastic n=1 Tax=Pisum sativum RepID=RUBB_PEA | SoyBase | E_val: 0 | ISS |
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Glyma15g40110 not represented in the dataset |
Glyma15g40110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g18760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g250500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g40110.1 sequence type=CDS gene model=Glyma15g40110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCCACCTTCACCGCAATGTCCGCTTGCAAGCTTTCCTCCTCCGCCGCCATCTCCTCCTTCCCCACCCACCGCCGCACCAACGCCGTCCTTCTGTCCAGACGCAGCCGCGCCGCCAGGGTCTCCGCCATGGCCAAGGAGTTGCACTTCAACAAAGACGGCACCGCAATTAGGAAGCTCCAGAGCGGTGTGAACAAGCTCGCGGATCTGGTTGGGGTCACGCTTGGTCCCAAGGGAAGGAATGTTGTTCTCGAAAGCAAGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGGTTGTTCTAGCTCAGGGTCTTATTGCCGAAGGCGTTAAGGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACCCGGGGCATTGAGAAGACGGCAAAAGCTCTTGTTTCTGAGCTTAAACTGATGTCAAAAGAGGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCTGGGAACAATTATGAAGTGGGAAATATGATAGCTGAAGCATTGAGCAGAGTTGGTAGAAAGGGTGTTGTGACCCTTGAGGAGGGTAAGAGTGCTGATAACAGTCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATACTGGAGGATGCTATTAGAAGTGGATACCCTATATTAATTATTGCTGAGGATATTGAACAAGAAGCTTTAGCAACTCTTGTGGTGAACAAACTTAGAGGATCACTGAAAATTGCAGCACTCAAGGCCCCTGGGTTTGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTTCTCACCAAGGATACAACCACAATTGTTGGTGATGGAAGTACCCAGGAAGCAGTGAACAAGAGAGTTGCACAGATTAGGAACCTAATTGAGGCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTCATACAGGTTGGTGCACAAACTGAGACTGAGCTCAAGGAAAAGAAATTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCAGCTGTAGAGGAGGGTATTGTAGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGTGTGGTTGTCGAGATAAAGGAACCTGAGCCTGTACCTGCTGGAAACCCCATGGACAATTCAGGATATGGTATCTAG
>Glyma15g40110.1 sequence type=predicted peptide gene model=Glyma15g40110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSTFTAMSACKLSSSAAISSFPTHRRTNAVLLSRRSRAARVSAMAKELHFNKDGTAIRKLQSGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVSELKLMSKEVEDSELADVAAVSAGNNYEVGNMIAEALSRVGRKGVVTLEEGKSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILEDAIRSGYPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGDRKSQYLDDIAILTGGTVIREEVGLTLDKAGKEVLGYASKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDTIKDSLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPAGNPMDNSGYGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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