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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g39940

Feature Type:gene_model
Chromosome:Gm15
Start:46828973
stop:46830242
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g39940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27090AT Annotation by Michelle Graham. TAIR10: glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420 SoyBaseE_val: 2.00E-29ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JBS3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBS3_SOYBN SoyBaseE_val: 1.00E-67ISS
UniRef100_Q6AVI7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVI7_ORYSJ SoyBaseE_val: 5.00E-18ISS

Expression Patterns of Glyma15g39940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g39940 not represented in the dataset
Glyma15g39940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g39940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g39940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g39940
>Glyma15g39940.1   sequence type=CDS   gene model=Glyma15g39940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAAATCAACAACACATCTTCTCAAAACCCTCGCCACGAGACCGAGATCGAGACCCAAAATGAAACTCTAGCTGAGAGTTCCAGCTCGACTGAGCTGAACTCGAACTCGAGGAATGACGTCGTTGTGGAAGACTTGCTTAATTTGCTCTATTTTGGTTCACTTTTTGATGTGAAGAGTGACTTTCGTGGCTACTGCTTGACCTATGATTACATCACCGACGATGCCACCGATATGCTTGGCGAAAAGGACTTGGATTCGATCTCCGCACTGAGAGGCTTTTCGCACAAGAACGCGCTGCATCGCTGCGTGGAACACGCCAAGCTGTGGCTTGCTAAGTCGGAGCAGCCCATTGGGCCTGATGCTGATTTACTTATGCTCTGGTTGAAGTTGTTGCGGCAGCTATTGGGGGCAATTACGTTTCCTTCCATGTGCTGGTGCGTGGGTCTGTGGTTCCGAATCTCATTGTGTTTCTTAGTTTTGAAGAAAATCATTATATTTCTTCTGCTGATACATGAGAAGGATGCTCTGGCATTGGCAATGACTTACCAAGAGGTCACCAATCACCATAAACAACGCCCAGCTATCAATGTTTCTGTTTAA
Predicted protein sequences of Glyma15g39940
>Glyma15g39940.1   sequence type=predicted peptide   gene model=Glyma15g39940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LQINNTSSQNPRHETEIETQNETLAESSSSTELNSNSRNDVVVEDLLNLLYFGSLFDVKSDFRGYCLTYDYITDDATDMLGEKDLDSISALRGFSHKNALHRCVEHAKLWLAKSEQPIGPDADLLMLWLKLLRQLLGAITFPSMCWCVGLWFRISLCFLVLKKIIIFLLLIHEKDALALAMTYQEVTNHHKQRPAINVSV*






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