SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G34070 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12402283-12403209 FORWARD LENGTH=308 | SoyBase | E_val: 1.00E-16 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24894 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24894:SF125 | Panther | JGI | ISS | ||
| PF03732 | PFAM | Retrotransposon gag protein | JGI | ISS | |
| UniRef100_I1KD74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KD74_SOYBN | SoyBase | E_val: 3.00E-68 | ISS |
| UniRef100_Q10MB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q10MB5_ORYSJ | SoyBase | E_val: 2.00E-31 | ISS |
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Glyma15g39892 not represented in the dataset |
Glyma15g39892 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g249500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g39892.1 sequence type=CDS gene model=Glyma15g39892 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCTCAAACCTTTCCCTTCTAGCTCTAGCAAACACCACCACCTCTAATCTAAATCTCCAACTTCCTTCTATCAACATAAAACTTGATAGAGACAACTACTCTCTTTGGCGCTCTACAATCATTTCTGCCCTTGAAACATTTGACCTTGAATCCTTCATACTGAATCCTTCTCCACCATTGGAAACACGTATTCTAACCACCTCTGATGGCATCACTACTACCGAAACCAACCCTGAGTTTATTCTGTGGCGCAAGCGTGATCGTTTTGTGTTACTGTGGCTAAAATCTACCCTCTCTGAACAAGCTTTATCATTGGTTGTTCGTGCCACCTCTTCCCATATGGCATGGACAGCCTTCGGGAAAACCTTCCAGGCCCAAACTCAAGCCAGGCGCATGGCAATGAAGTCTCAGCTTCAATCTCTCACTAAAGGATCACTCTCTATGTTAGAATATATTGAACGGAAAAGATCAATTTCCGACTCTCTTGCTGAAAATCTTCATCCAATTTTGGATGAGGATCTTGTCGGATACATCCCGAATGGCCTTGATCCTTCTTATGGCCCTTTTACCACAACTTTTATGATGAAATCGGAGGATGTTTTGGTTGACGATCTTGCTGGTCTTCTTCTTCAAGAAGAGGCACAATTGGAACACGATCATGCTCATCAACCTGTTATTGTCACCCAACCTCCCATAGTTATCTCTCAAGCTCCAAATTCTGCTCCTCTACTTCCTACCCCCACTGCTTATACCACAAACCTCTCTACCTCGAGGCCCACTTCTAACACCTATCAGCCCTATGGCGCTGGCCAATCTTTAGACCACACCTTTGACAATCGTCGTCGTCCCAACATTCGTCCACTATGTCAAATATGCAACAAATCTGGGCATGAAGCCATTGACTGCTGGCATCGTGCAAACCAAACAGCCTACCCCTCTCGCCGTCCCAATCCATGA
>Glyma15g39892.1 sequence type=predicted peptide gene model=Glyma15g39892 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATSNLSLLALANTTTSNLNLQLPSINIKLDRDNYSLWRSTIISALETFDLESFILNPSPPLETRILTTSDGITTTETNPEFILWRKRDRFVLLWLKSTLSEQALSLVVRATSSHMAWTAFGKTFQAQTQARRMAMKSQLQSLTKGSLSMLEYIERKRSISDSLAENLHPILDEDLVGYIPNGLDPSYGPFTTTFMMKSEDVLVDDLAGLLLQEEAQLEHDHAHQPVIVTQPPIVISQAPNSAPLLPTPTAYTTNLSTSRPTSNTYQPYGAGQSLDHTFDNRRRPNIRPLCQICNKSGHEAIDCWHRANQTAYPSRRPNP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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