Glyma15g39810 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g39810

Feature Type:	gene_model
Chromosome:	Gm15
Start:	46665708
stop:	46674900
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g39810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17130	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF572) \| chr1:5854264-5856472 FORWARD LENGTH=331	SoyBase	E_val: 4.00E-149	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2989	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12111	Panther	CELL CYCLE CONTROL PROTEIN CWF16-RELATED	JGI		ISS
PF04502	PFAM	Family of unknown function (DUF572)	JGI		ISS
UniRef100_G7LCI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LCI0_MEDTR	SoyBase	E_val: 1.00E-165	ISS
UniRef100_I1MJ16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ16_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g39810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g39810

Paralog	Evidence	Comments
Glyma13g33280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g39810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g248800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g39810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g39810

Limit To All Plant Sequences

>Glyma15g39810.2   sequence type=transcript   gene model=Glyma15g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGGGTGTAAGTAGCAAGGGCAATAGTTCCCTATCAAGTTCCGAGTTCCCTCTCCGCTATCTGTGATCCTACACTGCACCCTCTCCGCTCCTGTTCGAACCTTGCCGCCGTCATCGACGAGAAGGAAGAAATTTGAATTTGAAGAAAGATGGGAGAGAGGAAGGTGTTGAACAAGTATTACCCACCGGACTTTGATCCGTCGAAGCTTCCCAGAGCAAGAAGGCCAAAGAACCAGCAGATCAAGGTCCGCATGATGCTTCCAATGAGCATTCGATGCAACACTTGTGGTAATTACATCTACAAAGGAACCAAGTTCAATTCCAGAAAGGAAGATGTTATTGGCGAGACATATCTGGGAATTCAAATATTCAGGTTCTACTTTAAATGCACTAAGTGCTCAGCTGAGGTTACCATGAAGACTGATCCGCAGAATTCGGATTACATCGTTGAATCTGGTGCAACCAGAAATTTTGAACCTTGGCGTGCAGAAGATGAAGAAGCTGATAAAACGAAGGAGAAGAGGGATGCTGAAGAGATGGGAGATGCTATGAAATCATTGGAGAATAGAACCCTGGATTCTAAAAGGGAGATGGACATCCTTGCTGCATTGGATGAGATGAAGTCAATGAAGTCTAGGCATGCAACTGTCACTGTTGATGAAATGCTGGAGGCTCTGCAGCGCACAGCAGCTGACAAGGAGAAAAGGCTGGAACAAGAAGATGAAGCTCTGATAAAATCAGTTGTCTTTCATAATTCAGACGGTTTTGTCAGAAGAATTCGTGATGAAGATATTGAAACAGAGGAGCAATTGGATCAGTTTTCAAATGGACATGGCGAAACATCCAGTTCTAATACTAAGATTTCAGAAGATTGTCCAAGCAAACCAACTGACACTCTGACAAAAGCCAGTTTGGATGATTCTGGCAAACAAGAAAATTCACGCAGTGGTGGAAAGCTTAATTCTTTAGTGAGGATTTCTGTCATTAAGAAACCAGTGACCTCTGACGTTAAAAGTCCTGCAGAACCAGAACAAAAGAAACAAGAGAAAGATAATGAAACAAATACTGCTAGTGGACTATTATCTTTGTGTCAAAATTACGGAAGTGATGATGAGGACTAGTAGTCATAAATATTGAATGACTTTTTGTTTAACTGTTGCTCATTAGATTGTAATTGTAAGTTGTACTTGCAATGGAATGTGTGTCATATGCATATTTCTTGTATGACTAGAATAGAAATACACAGTTTTCAAGCTCTTACAGAAATCTGCAGAAATGCTGGTTATGTTGTTTAAGGAGAATGGAAGAAAAAAAGCATAAATTAGACTGATTTATTTTATTTGTATATAGAGCATAGATTTGTTATTTGTGCTGCTATCTGCT

Coding sequences of Glyma15g39810

Limit To All Plant Sequences

>Glyma15g39810.1   sequence type=CDS   gene model=Glyma15g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGAGGAAGGTGTTGAACAAGTATTACCCACCGGACTTTGATCCGTCGAAGCTTCCCAGAGCAAGAAGGCCAAAGAACCAGCAGATCAAGGTCCGCATGATGCTTCCAATGAGCATTCGATGCAACACTTGTGGTAATTACATCTACAAAGGAACCAAGTTCAATTCCAGAAAGGAAGATGTTATTGGCGAGACATATCTGGGAATTCAAATATTCAGGTTCTACTTTAAATGCACTAAGTGCTCAGCTGAGGTTACCATGAAGACTGATCCGCAGAATTCGGATTACATCGTTGAATCTGGTGCAACCAGAAATTTTGAACCTTGGCGTGCAGAAGATGAAGAAGCTGATAAAACGAAGGAGAAGAGGGATGCTGAAGAGATGGGAGATGCTATGAAATCATTGGAGAATAGAACCCTGGATTCTAAAAGGGAGATGGACATCCTTGCTGCATTGGATGAGATGAAGTCAATGAAGTCTAGGCATGCAACTGTCACTGTTGATGAAATGCTGGAGGCTCTGCAGCGCACAGCAGCTGACAAGGAGAAAAGGCTGGAACAAGAAGATGAAGCTCTGATAAAATCAGTTGTCTTTCATAATTCAGACGGTTTTGTCAGAAGAATTCGTGATGAAGATATTGAAACAGAGGAGCAATTGGATCAGTTTTCAAATGGACATGGCGAAACATCCAGTTCTAATACTAAGAGGCAAAAGATTTCAGAAGATTGTCCAAGCAAACCAACTGACACTCTGACAAAAGCCAGTTTGGATGATTCTGGCAAACAAGAAAATTCACGCAGTGGTGGAAAGCTTAATTCTTTAGTGAGGATTTCTGTCATTAAGAAACCAGTGACCTCTGACGTTAAAAGTCCTGCAGAACCAGAACAAAAGAAACAAGAGAAAGATAATGAAACAAATACTGCTAGTGGACTATTATCTTTGTGTCAAAATTACGGAAGTGATGATGAGGACTAG

>Glyma15g39810.2   sequence type=CDS   gene model=Glyma15g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGAGGAAGGTGTTGAACAAGTATTACCCACCGGACTTTGATCCGTCGAAGCTTCCCAGAGCAAGAAGGCCAAAGAACCAGCAGATCAAGGTCCGCATGATGCTTCCAATGAGCATTCGATGCAACACTTGTGGTAATTACATCTACAAAGGAACCAAGTTCAATTCCAGAAAGGAAGATGTTATTGGCGAGACATATCTGGGAATTCAAATATTCAGGTTCTACTTTAAATGCACTAAGTGCTCAGCTGAGGTTACCATGAAGACTGATCCGCAGAATTCGGATTACATCGTTGAATCTGGTGCAACCAGAAATTTTGAACCTTGGCGTGCAGAAGATGAAGAAGCTGATAAAACGAAGGAGAAGAGGGATGCTGAAGAGATGGGAGATGCTATGAAATCATTGGAGAATAGAACCCTGGATTCTAAAAGGGAGATGGACATCCTTGCTGCATTGGATGAGATGAAGTCAATGAAGTCTAGGCATGCAACTGTCACTGTTGATGAAATGCTGGAGGCTCTGCAGCGCACAGCAGCTGACAAGGAGAAAAGGCTGGAACAAGAAGATGAAGCTCTGATAAAATCAGTTGTCTTTCATAATTCAGACGGTTTTGTCAGAAGAATTCGTGATGAAGATATTGAAACAGAGGAGCAATTGGATCAGTTTTCAAATGGACATGGCGAAACATCCAGTTCTAATACTAAGATTTCAGAAGATTGTCCAAGCAAACCAACTGACACTCTGACAAAAGCCAGTTTGGATGATTCTGGCAAACAAGAAAATTCACGCAGTGGTGGAAAGCTTAATTCTTTAGTGAGGATTTCTGTCATTAAGAAACCAGTGACCTCTGACGTTAAAAGTCCTGCAGAACCAGAACAAAAGAAACAAGAGAAAGATAATGAAACAAATACTGCTAGTGGACTATTATCTTTGTGTCAAAATTACGGAAGTGATGATGAGGACTAG

Predicted protein sequences of Glyma15g39810

Limit To All Plant Sequences

>Glyma15g39810.1   sequence type=predicted peptide   gene model=Glyma15g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGERKVLNKYYPPDFDPSKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAEVTMKTDPQNSDYIVESGATRNFEPWRAEDEEADKTKEKRDAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVTVDEMLEALQRTAADKEKRLEQEDEALIKSVVFHNSDGFVRRIRDEDIETEEQLDQFSNGHGETSSSNTKRQKISEDCPSKPTDTLTKASLDDSGKQENSRSGGKLNSLVRISVIKKPVTSDVKSPAEPEQKKQEKDNETNTASGLLSLCQNYGSDDED*

>Glyma15g39810.2   sequence type=predicted peptide   gene model=Glyma15g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGERKVLNKYYPPDFDPSKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAEVTMKTDPQNSDYIVESGATRNFEPWRAEDEEADKTKEKRDAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVTVDEMLEALQRTAADKEKRLEQEDEALIKSVVFHNSDGFVRRIRDEDIETEEQLDQFSNGHGETSSSNTKISEDCPSKPTDTLTKASLDDSGKQENSRSGGKLNSLVRISVIKKPVTSDVKSPAEPEQKKQEKDNETNTASGLLSLCQNYGSDDED*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain