Glyma15g39780 - SoyBase

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Report for Sequence Feature Glyma15g39780

Feature Type:	gene_model
Chromosome:	Gm15
Start:	46627539
stop:	46629843
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g39780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00070	AT	Annotation by Michelle Graham. TAIR10: photosystem II reaction center protein K precursor \| chrC:7017-7202 FORWARD LENGTH=61	SoyBase	E_val: 2.00E-28	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009539	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II reaction center	SoyBase	N/A	ISS
GO:0030095	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02533	PFAM	Photosystem II 4 kDa reaction centre component	JGI		ISS
UniRef100_I1MJ15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ15_SOYBN	SoyBase	E_val: 2.00E-36	ISS
UniRef100_Q2PMS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II reaction center protein K n=1 Tax=Glycine max RepID=PSBK_SOYBN	SoyBase	E_val: 3.00E-34	ISS

Expression Patterns of Glyma15g39780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g39780 not represented in the dataset	Glyma15g39780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g39780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g39780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g39780

Limit To All Plant Sequences

>Glyma15g39780.2   sequence type=CDS   gene model=Glyma15g39780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTCTAATTAAAAAAACAAAAATAATTTATATTTTCTTAAAGAACAAAATGTTTGTTATGCTTAATATCTTTAATTTGGTCTGTATTTGTATTCACTCCATCCTTTATTCAAGTAGTTTTTTCTCGGCGAAATTGCCTGAAGCCTACGCTTTCTTGAATCCAATTGTGGATATTATGCCAGTAATACCCTTACTCTTTTTTCTTTTAGCTTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGA

Predicted protein sequences of Glyma15g39780

Limit To All Plant Sequences

>Glyma15g39780.2   sequence type=predicted peptide   gene model=Glyma15g39780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKILIKKTKIIYIFLKNKMFVMLNIFNLVCICIHSILYSSSFFSAKLPEAYAFLNPIVDIMPVIPLLFFLLAFVWQAAVSFR*

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