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Report for Sequence Feature Glyma15g39573

Feature Type:gene_model
Chromosome:Gm15
Start:46277162
stop:46279889
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g39573
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26690AT Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214 SoyBaseE_val: 6.00E-28ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008320GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity SoyBaseN/AISS
PTHR22811Panther COPII-COATED VESICLE MEMBRANE PROTEIN JGI ISS
PTHR22811:SF5Panther EMP24/GP25L-RELATED JGI ISS
PF01105PFAM emp24/gp25L/p24 family/GOLD JGI ISS
UniRef100_C6T3X3UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3X3_SOYBN SoyBaseE_val: 3.00E-39ISS
UniRef100_G7KKY5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane emp24 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KKY5_MEDTR SoyBaseE_val: 2.00E-35ISS

Expression Patterns of Glyma15g39573
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g39573 not represented in the dataset
Glyma15g39573 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g39573 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g247000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g39573
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g39573
>Glyma15g39573.1   sequence type=CDS   gene model=Glyma15g39573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCGAACACATCAGGTGACCACGATCAAGGAACTATTGAATTTGAGTGGAGAACTGGGGTTGTTGCCAAAGATTGGTCAAAGGTTGCTAAGAAAGGGCAGATTCAGGTAATGGAATTTGAGTTGAAGAAGCTATATGATACTGTCCTATCCATCCATGACGAGATGTTTTATCTTCGAGAAAGGGAGGAAGAGATGAAAGATATTAACAAAGCAACAAACTGCAAGATGTTTACCTTCAGTATATGA
Predicted protein sequences of Glyma15g39573
>Glyma15g39573.1   sequence type=predicted peptide   gene model=Glyma15g39573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKANTSGDHDQGTIEFEWRTGVVAKDWSKVAKKGQIQVMEFELKKLYDTVLSIHDEMFYLREREEEMKDINKATNCKMFTFSI*






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