Glyma15g39050 - SoyBase

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Report for Sequence Feature Glyma15g39050

Feature Type:	gene_model
Chromosome:	Gm15
Start:	45616336
stop:	45621202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g39050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53520	AT	Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein \| chr1:19976485-19977915 REVERSE LENGTH=287	SoyBase	E_val: 2.00E-97	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005504	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty acid binding	SoyBase	N/A	ISS
PF02431	PFAM	Chalcone-flavanone isomerase	JGI		ISS
UniRef100_B9N7T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone isomerase-like protein n=1 Tax=Populus trichocarpa RepID=B9N7T4_POPTR	SoyBase	E_val: 6.00E-96	ISS
UniRef100_I1MIX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIX4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g39050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g39050

Paralog	Evidence	Comments
Glyma13g33730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g39050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g242900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g39050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g39050

Limit To All Plant Sequences

>Glyma15g39050.1   sequence type=CDS   gene model=Glyma15g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGAGCTGTAGCAGCTTCCACATCGCTATACTTTTCACCATCCACAAACTCCACCAGAATTGTTGTTCTTAAAAGAATCTCAAATTCAACACTTCCATTCAGCAATGACCACTCTTTCTCACTCTTATCAGCCACCCCTATGCATTTCTCTTCACACAAGAGCAGTAGAAGGCAACCCCATTTCCTTGCACAAGCTGCTTCATCTTCTGCTGCAAATGCCGAATACGTGGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAATTTTCCTGGTTGCTCAAATTCATTAACTTTGTTTGGAACAGGATACAGGGAGAAAGTTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGTTTGTATCTAGATCAATCTGTCACCCAGGAATTGAATGCTTGGAAAGGGCAATCAAAAGATGCTATTCAAGGGAATTCTTCCTTGTTCGAGACCATTTTCCAATCTTCCTTTGAGAAATCATTGCAAATTGTTCTTGTCAGAGATGTTGATGGTAAAACTTTTTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTCCACAACCCACAACTACAGATGAAACTGCTTTGACCACTTTCCGTGGTGTCTTTCTAGATCGCCCTCTTAAGAAAGGAGCTATCATAATTTTGACTTGGTTGAACCCCTCCAGATTGCTTGTTTCTGTCTCCTCAAATGGGTTTCCATCTACTGTGGATGCTACAATCGAATCTGCAAACGTGGCTTCGGCTCTTTTTAATGTATTCCTTGGAGATAGTCCTGTTTCTCCCTCCTTGAAAGCTTCAGTGGCTGAAGGCTTGTCAAAAGTACTCAAATAA

Predicted protein sequences of Glyma15g39050

Limit To All Plant Sequences

>Glyma15g39050.1   sequence type=predicted peptide   gene model=Glyma15g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGAVAASTSLYFSPSTNSTRIVVLKRISNSTLPFSNDHSFSLLSATPMHFSSHKSSRRQPHFLAQAASSSAANAEYVEEPATNVKFQTSLNFPGCSNSLTLFGTGYREKVFAIIGVKVYAAGLYLDQSVTQELNAWKGQSKDAIQGNSSLFETIFQSSFEKSLQIVLVRDVDGKTFWDALSDAISPRIPQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSRLLVSVSSNGFPSTVDATIESANVASALFNVFLGDSPVSPSLKASVAEGLSKVLK*

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