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Report for Sequence Feature Glyma15g38920

Feature Type:gene_model
Chromosome:Gm15
Start:45428225
stop:45428581
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59190AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr3:21884740-21886101 FORWARD LENGTH=388 SoyBaseE_val: 2.00E-14ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7IJK8UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7IJK8_MEDTR SoyBaseE_val: 1.00E-16ISS
UniRef100_UPI000233BCCAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BCCA related cluster n=1 Tax=unknown RepID=UPI000233BCCA SoyBaseE_val: 3.00E-79ISS

Expression Patterns of Glyma15g38920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38920 not represented in the dataset
Glyma15g38920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g242000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g38920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38920
>Glyma15g38920.1   sequence type=CDS   gene model=Glyma15g38920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAACTCAAGTATGGAGCAATAAACATAATAAGCCAAATACATGACAGCATTCTTGGTCACATCTTGTCTTTCCTTCCAACTATGGAGGCAGTCCAAACTAGTGTGTTATCAACGAGGTGGATCAATGTTTGGACATCCATCACCAATCTAAAATTGAATGATCGTGTACTAAAGAAGATGCAAAAGAAACAATATGAGCATTTGGTGAACACAATGCTTCTTCACCTTGCCAATTTAAGCATCCAAAGTTTCTCTCTTTGTTTAACATGTTTTCATTATGAGTCATCCCAAGTCAGTGCATGGATCTCCTCTATATTGGAAATGGGAGTCCAAAGGCTTGAAATTCAGTATGAA
Predicted protein sequences of Glyma15g38920
>Glyma15g38920.1   sequence type=predicted peptide   gene model=Glyma15g38920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KQLKYGAINIISQIHDSILGHILSFLPTMEAVQTSVLSTRWINVWTSITNLKLNDRVLKKMQKKQYEHLVNTMLLHLANLSIQSFSLCLTCFHYESSQVSAWISSILEMGVQRLEIQYE






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