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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g38851

Feature Type:gene_model
Chromosome:Gm15
Start:45365843
stop:45366763
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38851
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15420AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278 SoyBaseE_val: 3.00E-21ISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JVJ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVJ0_SOYBN SoyBaseE_val: 6.00E-59ISS
UniRef100_Q9XI26UniRef Annotation by Michelle Graham. Most informative UniRef hit: F9L1.38 n=1 Tax=Arabidopsis thaliana RepID=Q9XI26_ARATH SoyBaseE_val: 7.00E-19ISS

Expression Patterns of Glyma15g38851
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38851 not represented in the dataset
Glyma15g38851 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38851 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g38851
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38851
>Glyma15g38851.1   sequence type=CDS   gene model=Glyma15g38851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATCATCATTCAGTTGCTGTTGTTGTTGTTGTTTTTCTTCTTAGAGAAAGATGAGCATATTTCTATATCGAGTGATGCCAAAAATTTAGTTACATCAGATTTTAAGGGTAAACATCTTCAAGTTTGGAAGTGTGATTTAAATTCAGGAAGTCTGTGTAGAGATCAACATGAGGCTGCTGAAGGAGTCCTTCTTGATGATGATTTGAATGAGCCAACAATGGGAGAGAAACTTGCCAGTCTAAGTGTTCTGGATGGGAACAAATCAAGGAGTGATATAGAGCAAGAATCTTCTATCCCAACAAAGCCTCCAAGTGCAGACTCTGTACATGTTTTGCTTAAGCAAGCATTAAATGCTGATGATCGCACCCTTCTGCTAGATTGCTTGTTTACACAAATTGAGAAGGTTCTCTTTCTCTCCTATTTCTATTGA
Predicted protein sequences of Glyma15g38851
>Glyma15g38851.1   sequence type=predicted peptide   gene model=Glyma15g38851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIIIQLLLLLLFFFLEKDEHISISSDAKNLVTSDFKGKHLQVWKCDLNSGSLCRDQHEAAEGVLLDDDLNEPTMGEKLASLSVLDGNKSRSDIEQESSIPTKPPSADSVHVLLKQALNADDRTLLLDCLFTQIEKVLFLSYFY*






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