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Report for Sequence Feature Glyma15g38680

Feature Type:gene_model
Chromosome:Gm15
Start:45139801
stop:45141261
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57590AT Annotation by Michelle Graham. TAIR10: adenosylmethionine-8-amino-7-oxononanoate transaminases | chr5:23318593-23322687 REVERSE LENGTH=833 SoyBaseE_val: 4.00E-17ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009102GO-bp Annotation by Michelle Graham. GO Biological Process: biotin biosynthetic process SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004015GO-mf Annotation by Michelle Graham. GO Molecular Function: adenosylmethionine-8-amino-7-oxononanoate transaminase activity SoyBaseN/AISS
GO:0004141GO-mf Annotation by Michelle Graham. GO Molecular Function: dethiobiotin synthase activity SoyBaseN/AISS
UniRef100_G7JD16UniRef Annotation by Michelle Graham. Most informative UniRef hit: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein n=1 Tax=Medicago truncatula RepID=G7JD16_MEDTR SoyBaseE_val: 5.00E-21ISS
UniRef100_I1LVT1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVT1_SOYBN SoyBaseE_val: 3.00E-37ISS

Expression Patterns of Glyma15g38680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38680 not represented in the dataset
Glyma15g38680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g38680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38680
>Glyma15g38680.1   sequence type=CDS   gene model=Glyma15g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAATCTGTTGGCCGACGAGGAAGGAGTTGGGCCCCCCTTGGAGCTGCTTTGTAAGACATTGTATGCGTGGGAGGAGGCCGTGTCCCCACTCTTGGCCACAGAGAGGGAGGGTTTGGTCCCGAAGGACTCGACGGTGCTGGAAACTCTTGGTGAATGTCTCAACGATGTGGCGGAATGGGGGGCCAGTAAGGAGAGACTGTTGGTGAAGTTGCCAGTCCAGGACCTTCTGGCTCGCTTCGATGTTACTTGTACAGAGTCCACTGATGTTGTGGATGTTGTTTTTGAGGATCACGATCTTCTAAATGAGGGTCCACTGATGTCATATATGCGAAACAAGTTTGAAGAGAAGGACTTGTATGGGGACGATTGGATACAACAGCGTAGGAAGATTGTGCAACAACATGCCAATCAATACAAAAGAAATGTTTGGGCAGAGGTTGTTTCCTATTGA
Predicted protein sequences of Glyma15g38680
>Glyma15g38680.1   sequence type=predicted peptide   gene model=Glyma15g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNLLADEEGVGPPLELLCKTLYAWEEAVSPLLATEREGLVPKDSTVLETLGECLNDVAEWGASKERLLVKLPVQDLLARFDVTCTESTDVVDVVFEDHDLLNEGPLMSYMRNKFEEKDLYGDDWIQQRRKIVQQHANQYKRNVWAEVVSY*






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