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Report for Sequence Feature Glyma15g38583

Feature Type:gene_model
Chromosome:Gm15
Start:45029099
stop:45030542
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38583
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42970AT Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein | chr5:17237470-17240649 REVERSE LENGTH=397 SoyBaseE_val: 4.00E-65ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0010100GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008180GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signalosome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10855Panther PROTEASOME REGULATORY SUBUNITS JGI ISS
PTHR10855:SF2Panther gb def: y55f3am.15.p [caenorhabditis elegans] JGI ISS
UniRef100_B9R7R6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cop9 complex subunit, putative n=1 Tax=Ricinus communis RepID=B9R7R6_RICCO SoyBaseE_val: 1.00E-68ISS
UniRef100_I1LNT0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNT0_SOYBN SoyBaseE_val: 9.00E-72ISS

Expression Patterns of Glyma15g38583
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38583 not represented in the dataset
Glyma15g38583 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38583 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g38583
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38583
>Glyma15g38583.1   sequence type=CDS   gene model=Glyma15g38583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCGGTTTTAGTTATTAGAGAGAAACTTGCTAAGCTTTATGAATCTGAGAAGCAATGGTCAAAAGCAGCTCAAATGCTCAGTGGTATTGACCTTGATTTAGGAATGAGGGTTATTGATTATGCATTCAGGGTTTCAAAATGTGTCCAAATTGCTTGTTTATATCTTGAGGACGATGATGTGGTTAATGCTGAAGTTTTTATTAATAAAGCATCATTCTTGGTCAACAACAGTCAGCATGAAGTTCTGAATTTAAAGTACAAGGTTTGCTATGCAAGGATTTTGGATTTGAAAAGGAAGTTTTTGGAAGCAGCATTACGATATTATGATATATCTCAAATTGAGAAAAGGAAAATAGGAGACGAGTATGTATTTTCATGTTATTTTTCCCTCCCTTAG
Predicted protein sequences of Glyma15g38583
>Glyma15g38583.1   sequence type=predicted peptide   gene model=Glyma15g38583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVLVIREKLAKLYESEKQWSKAAQMLSGIDLDLGMRVIDYAFRVSKCVQIACLYLEDDDVVNAEVFINKASFLVNNSQHEVLNLKYKVCYARILDLKRKFLEAALRYYDISQIEKRKIGDEYVFSCYFSLP*






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