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Report for Sequence Feature Glyma15g38520

Feature Type:gene_model
Chromosome:Gm15
Start:45012859
stop:45013065
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47780AT Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 4 | chr5:19347991-19350517 FORWARD LENGTH=616 SoyBaseE_val: 7.00E-15ISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0047262GO-mf Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity SoyBaseN/AISS
PTHR13778Panther GLYCOSYL TRANSFERASE-RELATED JGI ISS
PTHR13778:SF5Panther JGI ISS
UniRef100_G7ISN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Galacturonosyltransferase n=1 Tax=Medicago truncatula RepID=G7ISN0_MEDTR SoyBaseE_val: 4.00E-15ISS
UniRef100_I1L071UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L071_SOYBN SoyBaseE_val: 8.00E-16ISS

Expression Patterns of Glyma15g38520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38520 not represented in the dataset
Glyma15g38520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g240900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g38520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38520
>Glyma15g38520.1   sequence type=CDS   gene model=Glyma15g38520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATATTTTTTAATTAACTTGCAGGATGCCTCAAAACATGTTTTCCACATTGTTAGTGATAGACTCAATTACACAACGATGAGGATGTGGTTTTTGGTGAATCCACCTGGCAAGGCAACTATTCAAGTTCAATACATGTTTTCATAA
Predicted protein sequences of Glyma15g38520
>Glyma15g38520.1   sequence type=predicted peptide   gene model=Glyma15g38520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYFLINLQDASKHVFHIVSDRLNYTTMRMWFLVNPPGKATIQVQYMFS*






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