SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11720 | AT | Annotation by Michelle Graham. TAIR10: hapless 2 | chr4:7063291-7066784 FORWARD LENGTH=705 | SoyBase | E_val: 0 | ISS |
| GO:0009567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
| GO:0048235 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PF10699 | PFAM | Male gamete fusion factor | JGI | ISS | |
| UniRef100_G7KDG2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HAP2 n=1 Tax=Medicago truncatula RepID=G7KDG2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BCC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BCC3 related cluster n=1 Tax=unknown RepID=UPI000233BCC3 | SoyBase | E_val: 0 | ISS |
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Glyma15g38410 not represented in the dataset |
Glyma15g38410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g240000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g38410.3 sequence type=transcript gene model=Glyma15g38410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGCGTTCCGCTATCACCCTAATAATCATCTTCATACTTTCTTCCTTCTATGTCGTCGGAATTCAAATCATCTCCAAATCGAAGCTGGAGAAGTGCGAGAAGAACTCCAACTCCGACGACAATCTCAATTGTACTACCAAAATCGTACTCAACATGGCTGTTCCCAGTGGCTCGAGTGGCGGAGAGGCATCGATTGTTGCGGAATTGGTGGAAGTGGAGGAAAATTCAAGCAGGAAGATGCAGACATTGCGTATTCCTCCTGTCATAACGGTCAACAAAACTTCTGCATATGCCTTGTATCAGTTAACATACATACGAGATGTTCCTTATAAACCTGAAGAGTATTATGTTAAGACACGCAAATGCGAGCCAGATGCTGGTGCAAATGTCGTGAAGACATGTGAAAGACTGCGAGATGAAGAGGGTCATATTATCGAGTACACTCAGCCAATATGTTGTCCATGTGGGCCCCAGCGGCGGATGCCTTCATCATGTGGAAACTTTTTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCGTTTCCCTGGTGATTGGTTTCATGTTTTTGGCATTGGGCGGCGAACATTGGGATTTAGTGTTCGAATACAGGTGAAGAGTGGAACTAAAGTTTCGGAAGTGGTTGTGGGTCCTGAAAATAGAACAGTGATCTCTGATGATAAATTTTTGAGGGTTAATCTTATTGGAGATTTTGTTGGGTACACAAATATACCATCTTTTGAGGATTTCTATCTGGTCGTACCAAGGCAGGGCAGCCCTGCGCAACCACAGGATTTGGGGAGAAACATTTCTATGTGGATGTTGCTTGAGAGAGTGAGATTTACCTTAGATGGTATTGAATGTAACAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCGCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTGTGGAATTTTCGGGAGGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCACTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCAAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAAGGAGCCCAGGAAAGATAATAAGTGTTAGTGTCCCTACATTTGAAGCCCTAACTCAATTTGGTGTTGCTACAATCACAACTAAGAATACCGGTGAGGTGGAAGCGTCATATAGTTTGACGGAGCAATTTTTAATAATGAAGCCAAATGAGGTTACAACCCAATCATGCAAAATCTACCCAACCACTGATCAGGCTTCAAAATATTTTTGTGCGGCCGTACTAAAGGATTCTGATTATAATGAAGTTGATAGAGCTGAATGTCAATTTGCTACTACGGCAACTGTTCTTGACAACGACACGCAGGGTATGCCTTTTCAACCACAAGAGACCAGTATAAATAGTTTCTTTGATTCTATCGAAAGCATATGGAATAAAATATGGACAAGCTTAACAGAATTTATCACTGGAAAAACTTGTAGAGAAAAATGCTCTGGGTTTTTTGACTTCAAGTGCCACATACAATATGTTTGCTTGAGTTGGGTAATGATGTTTGGTCTGTTTTTGACAATTTTTCCGACAGTGCTTGTGGTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTGTATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGATAAACGTAAATTCAAAATTGACAAGGGGCATCACCATATTCATGATAACAAACATCATAAGCAAGAACATAGGCACTCTAACTATAGTGCTGAAAATAGGCGAAGGACCACTTATGAGCATATGCACAAGCATTCTGAAAGGAACTCCGATTATTTTGATGATTTACACCATGTTCATAAAGAAATGCACAAGTATGGGCATAAAAAACAGAATATGGATAATGTGCAGCATATTGTTGACCATCCTGTACATCACAAACACAGAAAGAAACGGGATAGCTCAAAGGGGGAGTTAAAGAGATGAAGCTAAAACATGATAAAGTGAGGCAAGAAAATTATGACAAACACATACAAGTTCTGCTAGACGAGCCAGAGGCTGAGTGGATTGAAGCCTGAACGTATAATTTAATGTACATACTTTTTAATTTCTGACACTAACGTTTTAGAGAAACTTGTTAAGTATTTCATAGAATCATAGTTACGGTTTTTATCCTTTTACCTTCTCCCGTTTCCACTACTAGTCTTCCTTCTTGCTTTCTCTTACTTTTTAATAGGGTGGGGCGGACAACAATTGAGGAAAAAAACTTATTGAAAGATAGATTTAGAATGTTATGTACATAAAACATATTTTATA
>Glyma15g38410.2 sequence type=CDS gene model=Glyma15g38410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGCGTTCCGCTATCACCCTAATAATCATCTTCATACTTTCTTCCTTCTATGTCGTCGGAATTCAAATCATCTCCAAATCGAAGCTGGAGAAGTGCGAGAAGAACTCCAACTCCGACGACAATCTCAATTGTACTACCAAAATCGTACTCAACATGGCTGTTCCCAGTGGCTCGAGTGGCGGAGAGGCATCGATTGTTGCGGAATTGGTGGAAGTGGAGGAAAATTCAAGCAGGAAGATGCAGACATTGCGTATTCCTCCTGTCATAACGGTCAACAAAACTTCTGCATATGCCTTGTATCAGTTAACATACATACGAGATGTTCCTTATAAACCTGAAGAGTATTATGTTAAGACACGCAAATGCGAGCCAGATGCTGGTGCAAATGTCGTGAAGACATGTGAAAGACTGCGAGATGAAGAGGGTCATATTATCGAGTACACTCAGCCAATATGTTGTCCATGTGGGCCCCAGCGGCGGATGCCTTCATCATGTGGAAACTTTTTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCGTTTCCCTGGTGATTGGTTTCATGTTTTTGGCATTGGGCGGCGAACATTGGGATTTAGTGTTCGAATACAGGTGAAGAGTGGAACTAAAGTTTCGGAAGTGGTTGTGGGTCCTGAAAATAGAACAGTGATCTCTGATGATAAATTTTTGAGGGTTAATCTTATTGGAGATTTTGTTGGGTACACAAATATACCATCTTTTGAGGATTTCTATCTGGTCGTACCAAGGCAGGGCAGCCCTGCGCAACCACAGGATTTGGGGAGAAACATTTCTATGTGGATGTTGCTTGAGAGAGTGAGATTTACCTTAGATGGTATTGAATGTAACAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCGCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTGTGGAATTTTCGGGAGGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCACTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCAAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAAGGAGCCCAGGAAAGATAATAAGTGTTAGTGTCCCTACATTTGAAGCCCTAACTCAATTTGGTGTTGCTACAATCACAACTAAGAATACCGGTGAGGTGGAAGCGTCATATAGTTTGACGTTTAATTGCTCCAGGGATATCACCCTGATGGAGGAGCAATTTTTAATAATGAAGCCAAATGAGGTTACAACCCAATCATGCAAAATCTACCCAACCACTGATCAGGCTTCAAAATATTTTTGTGCGGCCGTACTAAAGGATTCTGATTATAATGAAGTTGATAGAGCTGAATGTCAATTTGCTACTACGGCAACTGTTCTTGACAACGACACGCAGGGTATGCCTTTTCAACCACAAGAGACCAGTATAAATAGTTTCTTTGATTCTATCGAAAGCATATGGAATAAAATATGGACAAGCTTAACAGAATTTATCACTGGAAAAACTTGTAGAGAAAAATGCTCTGGGTTTTTTGACTTCAAGTGCCACATACAATATGTTTGCTTGAGTTGGGTAATGATGTTTGGTCTGTTTTTGACAATTTTTCCGACAGTGCTTGTGGTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTGTATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGATAAACGTAAATTCAAAATTGACAAGGGGCATCACCATATTCATGATAACAAACATCATAAGCAAGAACATAGGCACTCTAACTATAGTGCTGAAAATAGGCGAAGGACCACTTATGAGCATATGCACAAGCATTCTGAAAGGAACTCCGATTATTTTGATGATTTACACCATGTTCATAAAGAAATGCACAAGTATGGGCATAAAAAACAGAATATGGATAATGTGCAGCATATTGTTGACCATCCTGTACATCACAAACACAGAAAGAAACGGGATAGCTCAAAGGGGGAGTTAAAGAGATGA >Glyma15g38410.3 sequence type=CDS gene model=Glyma15g38410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGCGTTCCGCTATCACCCTAATAATCATCTTCATACTTTCTTCCTTCTATGTCGTCGGAATTCAAATCATCTCCAAATCGAAGCTGGAGAAGTGCGAGAAGAACTCCAACTCCGACGACAATCTCAATTGTACTACCAAAATCGTACTCAACATGGCTGTTCCCAGTGGCTCGAGTGGCGGAGAGGCATCGATTGTTGCGGAATTGGTGGAAGTGGAGGAAAATTCAAGCAGGAAGATGCAGACATTGCGTATTCCTCCTGTCATAACGGTCAACAAAACTTCTGCATATGCCTTGTATCAGTTAACATACATACGAGATGTTCCTTATAAACCTGAAGAGTATTATGTTAAGACACGCAAATGCGAGCCAGATGCTGGTGCAAATGTCGTGAAGACATGTGAAAGACTGCGAGATGAAGAGGGTCATATTATCGAGTACACTCAGCCAATATGTTGTCCATGTGGGCCCCAGCGGCGGATGCCTTCATCATGTGGAAACTTTTTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCGTTTCCCTGGTGATTGGTTTCATGTTTTTGGCATTGGGCGGCGAACATTGGGATTTAGTGTTCGAATACAGGTGAAGAGTGGAACTAAAGTTTCGGAAGTGGTTGTGGGTCCTGAAAATAGAACAGTGATCTCTGATGATAAATTTTTGAGGGTTAATCTTATTGGAGATTTTGTTGGGTACACAAATATACCATCTTTTGAGGATTTCTATCTGGTCGTACCAAGGCAGGGCAGCCCTGCGCAACCACAGGATTTGGGGAGAAACATTTCTATGTGGATGTTGCTTGAGAGAGTGAGATTTACCTTAGATGGTATTGAATGTAACAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCGCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTGTGGAATTTTCGGGAGGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCACTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCAAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAAGGAGCCCAGGAAAGATAATAAGTGTTAGTGTCCCTACATTTGAAGCCCTAACTCAATTTGGTGTTGCTACAATCACAACTAAGAATACCGGTGAGGTGGAAGCGTCATATAGTTTGACGGAGCAATTTTTAATAATGAAGCCAAATGAGGTTACAACCCAATCATGCAAAATCTACCCAACCACTGATCAGGCTTCAAAATATTTTTGTGCGGCCGTACTAAAGGATTCTGATTATAATGAAGTTGATAGAGCTGAATGTCAATTTGCTACTACGGCAACTGTTCTTGACAACGACACGCAGGGTATGCCTTTTCAACCACAAGAGACCAGTATAAATAGTTTCTTTGATTCTATCGAAAGCATATGGAATAAAATATGGACAAGCTTAACAGAATTTATCACTGGAAAAACTTGTAGAGAAAAATGCTCTGGGTTTTTTGACTTCAAGTGCCACATACAATATGTTTGCTTGAGTTGGGTAATGATGTTTGGTCTGTTTTTGACAATTTTTCCGACAGTGCTTGTGGTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTGTATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGATAAACGTAAATTCAAAATTGACAAGGGGCATCACCATATTCATGATAACAAACATCATAAGCAAGAACATAGGCACTCTAACTATAGTGCTGAAAATAGGCGAAGGACCACTTATGAGCATATGCACAAGCATTCTGAAAGGAACTCCGATTATTTTGATGATTTACACCATGTTCATAAAGAAATGCACAAGTATGGGCATAAAAAACAGAATATGGATAATGTGCAGCATATTGTTGACCATCCTGTACATCACAAACACAGAAAGAAACGGGATAGCTCAAAGGGGGAGTTAAAGAGATGA
>Glyma15g38410.2 sequence type=predicted peptide gene model=Glyma15g38410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRSAITLIIIFILSSFYVVGIQIISKSKLEKCEKNSNSDDNLNCTTKIVLNMAVPSGSSGGEASIVAELVEVEENSSRKMQTLRIPPVITVNKTSAYALYQLTYIRDVPYKPEEYYVKTRKCEPDAGANVVKTCERLRDEEGHIIEYTQPICCPCGPQRRMPSSCGNFFDKLTKGKANTAHCVRFPGDWFHVFGIGRRTLGFSVRIQVKSGTKVSEVVVGPENRTVISDDKFLRVNLIGDFVGYTNIPSFEDFYLVVPRQGSPAQPQDLGRNISMWMLLERVRFTLDGIECNKIGVSYEAFNQQPNFCASPFWTCLHNQLWNFREADLNRISRNQVPLYGLEGRFERINQHPSAGSYSFSIGITEVLNTNLVLELSANDVEYVYQRSPGKIISVSVPTFEALTQFGVATITTKNTGEVEASYSLTFNCSRDITLMEEQFLIMKPNEVTTQSCKIYPTTDQASKYFCAAVLKDSDYNEVDRAECQFATTATVLDNDTQGMPFQPQETSINSFFDSIESIWNKIWTSLTEFITGKTCREKCSGFFDFKCHIQYVCLSWVMMFGLFLTIFPTVLVVLWLLHQKGLFDPLYDWWEDILGADEQIIMDKRKFKIDKGHHHIHDNKHHKQEHRHSNYSAENRRRTTYEHMHKHSERNSDYFDDLHHVHKEMHKYGHKKQNMDNVQHIVDHPVHHKHRKKRDSSKGELKR* >Glyma15g38410.3 sequence type=predicted peptide gene model=Glyma15g38410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRSAITLIIIFILSSFYVVGIQIISKSKLEKCEKNSNSDDNLNCTTKIVLNMAVPSGSSGGEASIVAELVEVEENSSRKMQTLRIPPVITVNKTSAYALYQLTYIRDVPYKPEEYYVKTRKCEPDAGANVVKTCERLRDEEGHIIEYTQPICCPCGPQRRMPSSCGNFFDKLTKGKANTAHCVRFPGDWFHVFGIGRRTLGFSVRIQVKSGTKVSEVVVGPENRTVISDDKFLRVNLIGDFVGYTNIPSFEDFYLVVPRQGSPAQPQDLGRNISMWMLLERVRFTLDGIECNKIGVSYEAFNQQPNFCASPFWTCLHNQLWNFREADLNRISRNQVPLYGLEGRFERINQHPSAGSYSFSIGITEVLNTNLVLELSANDVEYVYQRSPGKIISVSVPTFEALTQFGVATITTKNTGEVEASYSLTEQFLIMKPNEVTTQSCKIYPTTDQASKYFCAAVLKDSDYNEVDRAECQFATTATVLDNDTQGMPFQPQETSINSFFDSIESIWNKIWTSLTEFITGKTCREKCSGFFDFKCHIQYVCLSWVMMFGLFLTIFPTVLVVLWLLHQKGLFDPLYDWWEDILGADEQIIMDKRKFKIDKGHHHIHDNKHHKQEHRHSNYSAENRRRTTYEHMHKHSERNSDYFDDLHHVHKEMHKYGHKKQNMDNVQHIVDHPVHHKHRKKRDSSKGELKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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