Glyma15g38120 - SoyBase

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Report for Sequence Feature Glyma15g38120

Feature Type:	gene_model
Chromosome:	Gm15
Start:	44198773
stop:	44198973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g38120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00640	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L33 \| chrC:67488-67688 FORWARD LENGTH=66	SoyBase	E_val: 1.00E-30	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0000311	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF00471	PFAM	Ribosomal protein L33	JGI		ISS
UniRef100_I1MIU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIU8_SOYBN	SoyBase	E_val: 1.00E-39	ISS
UniRef100_Q2PMR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L33, chloroplastic n=1 Tax=Glycine max RepID=RK33_SOYBN	SoyBase	E_val: 7.00E-36	ISS

Expression Patterns of Glyma15g38120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38120 not represented in the dataset	Glyma15g38120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g239000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g38120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g38120

Limit To All Plant Sequences

>Glyma15g38120.1   sequence type=CDS   gene model=Glyma15g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGGTAAAGATATCCGAGTAATTGTTATTTTGAAATGTACCGATTGTGATAAAAAGAGTGTTAATAAGGAATCAACGGGTATTTCTAGATATATAATTAAAAAGAATCGACAGAATACGCCTAGTCGATTGGAATTGAGAAAATTTTGTCCCCGTTGTTTCAAACATACAATTCACGCAGAAATAAAGAAATAG

Predicted protein sequences of Glyma15g38120

Limit To All Plant Sequences

>Glyma15g38120.1   sequence type=predicted peptide   gene model=Glyma15g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGKDIRVIVILKCTDCDKKSVNKESTGISRYIIKKNRQNTPSRLELRKFCPRCFKHTIHAEIKK*

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