Glyma15g38116 - SoyBase

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Report for Sequence Feature Glyma15g38116

Feature Type:	gene_model
Chromosome:	Gm15
Start:	44193547
stop:	44193681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g38116

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00630	AT	Annotation by Michelle Graham. TAIR10: PSAJ \| chrC:66929-67063 FORWARD LENGTH=44	SoyBase	E_val: 3.00E-21	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009538	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I reaction center	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01701	PFAM	Photosystem I reaction centre subunit IX / PsaJ	JGI		ISS
UniRef100_A4GGC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Photosystem I reaction center subunit IX n=7 Tax=Papilionoideae RepID=PSAJ_PHAVU	SoyBase	E_val: 7.00E-21	ISS
UniRef100_A4GGC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I reaction center subunit IX n=7 Tax=Papilionoideae RepID=PSAJ_PHAVU	SoyBase	E_val: 7.00E-21	ISS

Expression Patterns of Glyma15g38116

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38116 not represented in the dataset	Glyma15g38116 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g38116 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g38116

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g38116

Limit To All Plant Sequences

>Glyma15g38116.1   sequence type=CDS   gene model=Glyma15g38116   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGATCTAAAAACATATCTTTCCGTGGCACTAGTAGTAAGTACTCTATGGTTCGGGGCTTTGGCGGGTCTCTTGATAGAGATCAATCGTTTTTTTCCAGATGCATTGATATTCCCTTTTTTTTCATTCTAG

Predicted protein sequences of Glyma15g38116

Limit To All Plant Sequences

>Glyma15g38116.1   sequence type=predicted peptide   gene model=Glyma15g38116   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDLKTYLSVALVVSTLWFGALAGLLIEINRFFPDALIFPFFSF*

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