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Report for Sequence Feature Glyma15g38070

Feature Type:gene_model
Chromosome:Gm15
Start:44158196
stop:44162846
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38760AT Annotation by Michelle Graham. TAIR10: annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321 SoyBaseE_val: 3.00E-133ISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009986GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell surface SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005544GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding SoyBaseN/AISS
KOG0819 KOG Annexin JGI ISS
PTHR10502Panther ANNEXIN JGI ISS
PTHR10502:SF10Panther ANNEXIN VII JGI ISS
PF00191PFAM Annexin JGI ISS
UniRef100_C6TK93UniRef Annotation by Michelle Graham. Most informative UniRef hit: Annexin n=1 Tax=Glycine max RepID=C6TK93_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000189D84DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D84D related cluster n=1 Tax=unknown RepID=UPI000189D84D SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g38070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g38070
ParalogEvidenceComments
Glyma13g27020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g38070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g238500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g38070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38070
>Glyma15g38070.1   sequence type=CDS   gene model=Glyma15g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTGAAACTGCCAGAGGTTGTTCCTTCTCCCACACAAGACAGTGAACGACTCAGAAAGGCTTTCCAAGGATTTGGGACAGATGAGAAAGCGGTGATATTGGTATTGGGACACAGGAATGCTCAACAAAGGAAGAAAATTGGAGAAACTTATCAGCAGCTTTACAATGAATCGCTTGTCGATCGTCTTCATTCTGAATTGTCTGGTGATTTTAGAAATGCTGTAATTCTCTGGACCTACGATCCTCCAGAAAGGCATGCGAGACTAGCAAAGGATGCATTGAAGGCTAAGAAGGGGATTAAACACCTTCAGGTTCTGGTTGAAATAGCATGTGCATCAACTCCTAACCATTTGGTGGCTGTGAGGCAGGCTTACTGCTCTCTCTTTGATTGCTCACTTGAGGAGGACATCATAGCCTCTGTTGCTCCAGCCCTCAGAAAGCTTTTAGTGAGCCTAGTAAGCTCATTCAGGTATGATAAAGTGGCTGTAAATTTGGAGGTAGCCAAGGAAGAGGCATCAAAACTACATGAAGCTATCAACAGCAAGCAATTAGACAATGATCATATTATTTGGATACTTAGCACCAGGAATCTTTTCCAGCTCCGGGAAACTTTTGCATGCTACAATAACCTCTATGGGAATACATTGGAACAGGACATAAAAAAATGTGGTAATGGTGATTTGGAATCTCTCTTACATACGGTGATATGGTGTATAGACTGCCCCGAGAAACATTTTGCAAAGGTTGTAAGAGATTCTATAGTTGGGTTTGGAACCGATGAAGATTCCCTCAACAGAGCTATTGTAACTCGAGCCGAAATTGATCTGTTGAACGTCAGATTTGAATATGCTAACGTGTACAAGTCTAGTCTTGATGATGATGTTATTGGGGATACTTCAGGGTACTACAAAGATTTTTTGATGACTTTGCTAGGGAAAGGTCCAGATGGAGAGTGA
Predicted protein sequences of Glyma15g38070
>Glyma15g38070.1   sequence type=predicted peptide   gene model=Glyma15g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLKLPEVVPSPTQDSERLRKAFQGFGTDEKAVILVLGHRNAQQRKKIGETYQQLYNESLVDRLHSELSGDFRNAVILWTYDPPERHARLAKDALKAKKGIKHLQVLVEIACASTPNHLVAVRQAYCSLFDCSLEEDIIASVAPALRKLLVSLVSSFRYDKVAVNLEVAKEEASKLHEAINSKQLDNDHIIWILSTRNLFQLRETFACYNNLYGNTLEQDIKKCGNGDLESLLHTVIWCIDCPEKHFAKVVRDSIVGFGTDEDSLNRAIVTRAEIDLLNVRFEYANVYKSSLDDDVIGDTSGYYKDFLMTLLGKGPDGE*






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