Glyma15g38060 - SoyBase

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Report for Sequence Feature Glyma15g38060

Feature Type:	gene_model
Chromosome:	Gm15
Start:	44140868
stop:	44144263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g38060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38750	AT	Annotation by Michelle Graham. TAIR10: annexin 4 \| chr2:16196582-16198431 REVERSE LENGTH=319	SoyBase	E_val: 1.00E-122	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009986	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell surface	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding	SoyBase	N/A	ISS
KOG0819	KOG	Annexin	JGI		ISS
PTHR10502	Panther	ANNEXIN	JGI		ISS
PTHR10502:SF10	Panther	ANNEXIN VII	JGI		ISS
PF00191	PFAM	Annexin	JGI		ISS
UniRef100_D6QX28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Annexin 11 n=1 Tax=Glycine max RepID=D6QX28_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D6QX28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annexin 11 n=1 Tax=Glycine max RepID=D6QX28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g38060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g38060

Paralog	Evidence	Comments
Glyma13g27010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g38060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g238400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g38060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g38060

Limit To All Plant Sequences

>Glyma15g38060.2   sequence type=transcript   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACCATACCCTTTATTGTACCTCACCTGTCTCAACTCTATCAAACTTCAAAGTTCACACACACAAAAGAATCAGCATGGCTTTCAATCAAGAGTTAGAAGCTGTAACCCAAGCTTTCTCAGGTTCTCTATTTGGTTTCACACTCACCTAAGTTTGTAACATATTAGTTACCTCATTTTTTAATTATTATTAAATATGCATTCCTTATCCATGGGGTTGATCTAGTGAAAACGGTTAGTCTCTAGTAACGTGGTAAACAAAGATTCAAATCTTTACTAAGAAATGCATTTACAATCTGTGTCTGATCATATTTTGAACAAGATTGTCTTCGAATGACGTTATTAATCTGTCTGAAACCATAAAATATGCATGTATTTGGTGCTTATGATGGTTAGTGATTTGGTGATTTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTGTTCAGTGAAGATCATGAACGCCATTTTCAGAGGTGGGATGATCAATATGTCCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAAAGAGGCCCTAAAGAAGGGTCCAAATGCATATGGAGTGCTGATTGAGGTTTCATGCACTAGATCCTCAGAAGAGCTATTGGGAGCTAGGAAGGCATACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGCATTGAAAGAAAGCTATTGGTTGCCCTACTAAGTGCCTATAGATACGAAGGAACAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCAATTAAGAATGCTCATAAGAAGCCTATTAATGAGGATGATGAAGTGATAAGGATATTGGCAACAAGAAGCAAACTACATCTCCAGGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGATCTTGATGATTTAAGATTTAAAGAGGCTGTGCAATGCCTTTGTACCCCACAAACATATTTCAGCAAGGTTTTGAATGCAGCATTGCGAATTGATGTGGACAAGAATACTAAGAAATCGCTTACTCGTGTCGTTGTTACTCGAGCTGATATTGATATGAAAGACATAAAGGCAGAGTACCATAATCTATATGGGGTTTCTTTACCCCAGAAAGTTGAAGAGGTTGCTAGAGGGAGCTACAAGGATTTCTTGCTAAACTTGATTGTTAGAGGAGGCTAATTGAAGAAATTGAAAAGAGAACAAAAACTTGGAAGATCAAATAAAAAAGGAAAATTTTTTCCTCCCAGTTTTCCTTGATTTGTTGCTGATCCTTTTCATTGCATGATATTTCTTCATCTTGTATTACTGTCGTCACAAAAACAAAAAAGGAAAAGTGTAATCAAATAAAAATGTTCAGGTAATTTCTTCCAACACAAATATCCTTTGCTATCATGTTACAGTTCTGTATGCTATATACTATGGTTAAATGGTGGGGGGTTATTTTCTAAGATTCTAAGGTATAGTACTGGTAAAGAGATCAATTATTTCAAAAACAATCACATAAATATGAAATGACAAGCAAAAAGAAAATACAAGTCGCTGAAGATCTTA

>Glyma15g38060.3   sequence type=transcript   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACCATACCCTTTATTGTACCTCACCTGTCTCAACTCTATCAAACTTCAAAGTTCACACACACAAAAGAATCAGCATGGCTTTCAATCAAGAGTTAGAAGCTGTAACCCAAGCTTTCTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTGTTCAGTGAAGATCATGAACGCCATTTTCAGAGGTGGGATGATCAATATGTCCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAAAGAGGCCCTAAAGAAGGGTCCAAATGCATATGGAGTGCTGATTGAGGTTTCATGCACTAGATCCTCAGAAGAGCTATTGGGAGCTAGGAAGGCATACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGCATTGAAAGAAAGCTATTGGTTGCCCTACTAAGTGCCTATAGATACGAAGGAACAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCAATTAAGAATGCTCATAAGAAGCCTATTAATGAGGATGATGAAGTGATAAGGATATTGGCAACAAGAAGCAAACTACATCTCCAGGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGTATTAAACACTACTGATGCACCATATATACTAGTGACATTTGAAGTTCTATACTTCTATTATAAATTTATAATTATCATATAATTCTATATGCTATTGCTAACTTAAGTCTTGGGGTTCTGTTGTAATTCAAATATGATGAGATTATATTTCTGATTAAACCTTCACTGCTTGTGGCCAATAGGATCTTGATGATTTAAGATTTAAAGAGGCTGTGCAATGCCTTTGTACCCCACAAACATATTTCAGCAAGGTAAGATGAAGTTCCAATTTTAGAATCCAACCCCTCAAGTTCTTGCCTTCGTTTTCCCTTTTTATTTGTTATAACAATAATTATGAAATTTATTGTAAATTGCATTGTTCTTTTGTCCCCAGGTTTTGAATGCAGCATTGCGAATTGATGTGGACAAGAATACTAAGAAATCGCTTACTCGTGTCGTTGTTACTCGAGCTGATATTGATATGAAAGACATAAAGGCAGAGTACCATAATCTATATGGGGTTTCTTTACCCCAGAAAGTTGAAGAGGTTGCTAGAGGGAGCTACAAGGATTTCTTGCTAAACTTGATTGTTAGAGGAGGCTAATTGAAGAAATTGAAAAGAGAACAAAAACTTGGAAGATCAAATAAAAAAGGAAAATTTTTTCCTCCCAGTTTTCCTTGATTTGTTGCTGATCCTTTTCATTGCATGATATTTCTTCATCTTGTATTACTGTCGTCACAAAAACAAAAAAGGAAAAGTGTAATCAAATAAAAATGTTCAGGTAATTTCTTCCAACACAAATATCCTTTGCTATCATGTTACAGTTCTGTATGCTATATACTATGGTTAAATGGTGGGGGGTTATTTTCTAAGATTCTAAGGTATAGTACTGGTAAAGAGATCAATTATTTCAAAAACAATCACATAAATATGAAATGACAAGCAAAAAGAAAATACAAGTCGCTGAAGATCTTA

Coding sequences of Glyma15g38060

Limit To All Plant Sequences

>Glyma15g38060.1   sequence type=CDS   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCAATCAAGAGTTAGAAGCTGTAACCCAAGCTTTCTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTGTTCAGTGAAGATCATGAACGCCATTTTCAGAGGTGGGATGATCAATATGTCCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAAAGAGGCCCTAAAGAAGGGTCCAAATGCATATGGAGTGCTGATTGAGGTTTCATGCACTAGATCCTCAGAAGAGCTATTGGGAGCTAGGAAGGCATACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGCATTGAAAGAAAGCTATTGGTTGCCCTACTAAGTGCCTATAGATACGAAGGAACAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCAATTAAGAATGCTCATAAGAAGCCTATTAATGAGGATGATGAAGTGATAAGGATATTGGCAACAAGAAGCAAACTACATCTCCAGGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGATCTTGATGATTTAAGATTTAAAGAGGCTGTGCAATGCCTTTGTACCCCACAAACATATTTCAGCAAGGTTTTGAATGCAGCATTGCGAATTGATGTGGACAAGAATACTAAGAAATCGCTTACTCGTGTCGTTGTTACTCGAGCTGATATTGATATGAAAGACATAAAGGCAGAGTACCATAATCTATATGGGGTTTCTTTACCCCAGAAAGTTGAAGAGGTTGCTAGAGGGAGCTACAAGGATTTCTTGCTAAACTTGATTGTTAGAGGAGGCTAA

>Glyma15g38060.2   sequence type=CDS   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTGGTGCTTATGATGGTTAGTGATTTGGTGATTTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTGTTCAGTGAAGATCATGAACGCCATTTTCAGAGGTGGGATGATCAATATGTCCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAAAGAGGCCCTAAAGAAGGGTCCAAATGCATATGGAGTGCTGATTGAGGTTTCATGCACTAGATCCTCAGAAGAGCTATTGGGAGCTAGGAAGGCATACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGCATTGAAAGAAAGCTATTGGTTGCCCTACTAAGTGCCTATAGATACGAAGGAACAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCAATTAAGAATGCTCATAAGAAGCCTATTAATGAGGATGATGAAGTGATAAGGATATTGGCAACAAGAAGCAAACTACATCTCCAGGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGATCTTGATGATTTAAGATTTAAAGAGGCTGTGCAATGCCTTTGTACCCCACAAACATATTTCAGCAAGGTTTTGAATGCAGCATTGCGAATTGATGTGGACAAGAATACTAAGAAATCGCTTACTCGTGTCGTTGTTACTCGAGCTGATATTGATATGAAAGACATAAAGGCAGAGTACCATAATCTATATGGGGTTTCTTTACCCCAGAAAGTTGAAGAGGTTGCTAGAGGGAGCTACAAGGATTTCTTGCTAAACTTGATTGTTAGAGGAGGCTAA

>Glyma15g38060.3   sequence type=CDS   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCAATCAAGAGTTAGAAGCTGTAACCCAAGCTTTCTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTGTTCAGTGAAGATCATGAACGCCATTTTCAGAGGTGGGATGATCAATATGTCCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAAAGAGGCCCTAAAGAAGGGTCCAAATGCATATGGAGTGCTGATTGAGGTTTCATGCACTAGATCCTCAGAAGAGCTATTGGGAGCTAGGAAGGCATACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGCATTGAAAGAAAGCTATTGGTTGCCCTACTAAGTGCCTATAGATACGAAGGAACAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCAATTAAGAATGCTCATAAGAAGCCTATTAATGAGGATGATGAAGTGATAAGGATATTGGCAACAAGAAGCAAACTACATCTCCAGGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGTATTAAACACTACTGATGCACCATATATACTAGTGACATTTGAAGTTCTATACTTCTATTATAAATTTATAATTATCATATAA

Predicted protein sequences of Glyma15g38060

Limit To All Plant Sequences

>Glyma15g38060.1   sequence type=predicted peptide   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFNQELEAVTQAFSGHGVDEKSLVTLLGKWDPLERESFRKKTPHLFSEDHERHFQRWDDQYVRLLKHEFVRFKNAVVLWSMHPWERDARLVKEALKKGPNAYGVLIEVSCTRSSEELLGARKAYHSLFDHSIEEDVASHIHGIERKLLVALLSAYRYEGTKVKDDTAKSEAKILSNAIKNAHKKPINEDDEVIRILATRSKLHLQAVYKHYKEISGKNLDEDLDDLRFKEAVQCLCTPQTYFSKVLNAALRIDVDKNTKKSLTRVVVTRADIDMKDIKAEYHNLYGVSLPQKVEEVARGSYKDFLLNLIVRGG*

>Glyma15g38060.2   sequence type=predicted peptide   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLVLMMVSDLVISGHGVDEKSLVTLLGKWDPLERESFRKKTPHLFSEDHERHFQRWDDQYVRLLKHEFVRFKNAVVLWSMHPWERDARLVKEALKKGPNAYGVLIEVSCTRSSEELLGARKAYHSLFDHSIEEDVASHIHGIERKLLVALLSAYRYEGTKVKDDTAKSEAKILSNAIKNAHKKPINEDDEVIRILATRSKLHLQAVYKHYKEISGKNLDEDLDDLRFKEAVQCLCTPQTYFSKVLNAALRIDVDKNTKKSLTRVVVTRADIDMKDIKAEYHNLYGVSLPQKVEEVARGSYKDFLLNLIVRGG*

>Glyma15g38060.3   sequence type=predicted peptide   gene model=Glyma15g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFNQELEAVTQAFSGHGVDEKSLVTLLGKWDPLERESFRKKTPHLFSEDHERHFQRWDDQYVRLLKHEFVRFKNAVVLWSMHPWERDARLVKEALKKGPNAYGVLIEVSCTRSSEELLGARKAYHSLFDHSIEEDVASHIHGIERKLLVALLSAYRYEGTKVKDDTAKSEAKILSNAIKNAHKKPINEDDEVIRILATRSKLHLQAVYKHYKEISGKNLDEVLNTTDAPYILVTFEVLYFYYKFIIII*

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