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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g38051

Feature Type:gene_model
Chromosome:Gm15
Start:44136934
stop:44138683
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g38051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12380AT Annotation by Michelle Graham. TAIR10: annexin 8 | chr5:4009223-4010687 FORWARD LENGTH=316 SoyBaseE_val: 1.00E-24ISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005544GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding SoyBaseN/AISS
PTHR10502Panther ANNEXIN JGI ISS
PTHR10502:SF10Panther ANNEXIN VII JGI ISS
PF00191PFAM Annexin JGI ISS
UniRef100_I1M0U7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Annexin n=1 Tax=Glycine max RepID=I1M0U7_SOYBN SoyBaseE_val: 2.00E-40ISS
UniRef100_UPI000233BB64UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BB64 related cluster n=1 Tax=unknown RepID=UPI000233BB64 SoyBaseE_val: 5.00E-62ISS

Expression Patterns of Glyma15g38051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g38051 not represented in the dataset
Glyma15g38051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g38051
ParalogEvidenceComments
Glyma13g27000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g38051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g238300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g38051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g38051
>Glyma15g38051.1   sequence type=CDS   gene model=Glyma15g38051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCTATCAAAGAAAAGAAAGGTCACCATGAAGAAGTTATCAGCATCCTTGGTACAAGGAGCAAGACCCAACTTGTGGCAACTTTCAACCGCTTCAAAGATGAAAATGGTAGTTCTATTAGTAAGAAACTGTATGTTGGAGGAAACATCTGATGACTTCAATAAGGCTGTCAATGTTGCAATTCATTGCATCAATGATCACAAGTACTATGAAAAGGTTCTTCGAAATGCAATAAAAGGGGTTGGAACTGATGAGGATGGACTAACTCGTGTGTTTGTCACAAGGATTACTGAGAAGGACCTGAAGGACATCAAAGAGCTATATTATAAGAAAAACAGTGGTCACCTAGAGGATGCAGTGGCCAAGGAAATCTCAGGTTACTACAAGAAGTTTCTCCTCACTTTGTTGGGGAAAGAAGGCTGA
Predicted protein sequences of Glyma15g38051
>Glyma15g38051.1   sequence type=predicted peptide   gene model=Glyma15g38051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLSKKRKVTMKKLSASLVQGARPNLWQLSTASKMKMVVLLVRNCMLEETSDDFNKAVNVAIHCINDHKYYEKVLRNAIKGVGTDEDGLTRVFVTRITEKDLKDIKELYYKKNSGHLEDAVAKEISGYYKKFLLTLLGKEG*






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