SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12380 | AT | Annotation by Michelle Graham. TAIR10: annexin 8 | chr5:4009223-4010687 FORWARD LENGTH=316 | SoyBase | E_val: 7.00E-129 | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005544 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding | SoyBase | N/A | ISS |
| KOG0819 | KOG | Annexin | JGI | ISS | |
| PTHR10502 | Panther | ANNEXIN | JGI | ISS | |
| PTHR10502:SF10 | Panther | ANNEXIN VII | JGI | ISS | |
| PF00191 | PFAM | Annexin | JGI | ISS | |
| UniRef100_C6T7B5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Annexin n=1 Tax=Glycine max RepID=C6T7B5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_C6T7B5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Annexin n=1 Tax=Glycine max RepID=C6T7B5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g38010 not represented in the dataset |
Glyma15g38010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g26960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g237800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g38010.2 sequence type=transcript gene model=Glyma15g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATACTATATATACATGAGCTAGGAAACCAAACTCCAATGTACCAAACACCATACTGAGGAAAGCATAATCAAATCAACCATGGCTACCCTCATTGCTCCCATCACCTTTTCGCCTGGTTTAGATGCAGAAGCTCTTAGAAAAGCTTTCCAAGGATGGGGGACTGATGAGAAGACCGTTATAGCAATATTGGGTCACAGAAATGTTCATCAGAGGCAACAAATCAGAAAGATTTATGAGGAAATTTACCAAGAGGACCTCATCAAACGCCTAGAGTCTGAGCTCTCTGGTGACTTTGAGAGAGCTGTGTACCGTTGGATGCTGGAACCTGCAGATCGTGATGCTGTTTTGGCCAATGTTGCCATCAAGAATGGCAGCAAAGGTTACCATGTGATTGTGGAAATTGCTTGTGTGCTTTCAGCTGAAGAGGTCTTGGCAGTGAAGCGTGCCTATCACAACCGTTACAAGAGATCTTTGGAAGAAGATGTAGCTACTAATACCACTGGTGACATTCGCCAGCTGTTGGTTGGGTTGGTGACCGCATATAGGTATGGTGGAGATGAGATCAATGCAAAATTGGCCAAAACTGAAGCTGATATTCTTCATGAATCTATCAAGGAGAAAAAGGGCAACCATGAAGAAGCCATCAGGATCCTTACTACAAGGAGCAAGACCCAACTTCTGGCAACTTTCAACCGCTACAGAGATGACCATGGCGCTTCTATAACTAAGAAATTGTTGGATAATGCATCCACTGACTTTCAGAAGGCATTGCACACTGCTATTAGATGTATCAATGACCACAAAAAGTACTATGAAAAGGTTCTGCGCAACGCTCTAAAAAATGTTGGAACTGATGAGGATGCACTGACCCGTGTGGTGGTCTCAAGGGCTGAGAAGGACCTCAGGGACATCAAAGAGCGATATTATAAGAGAAACAGTGTTCACCTTGAGGATGCAGTGGCCAAGGAAATCTCAGGGGACTACAAGAAATTCATCCTCACTCTGTTGGGGAAGGAAGATTGATGTGATTGCTCTCTAGCTAAGGACATATCTTATAGTATTTGGTTATGCTGGTTTCTTGTGCTGTGATTTGGTTAATTTCCCTACTTTGAGTATGCTTTTATGAGTGCTGTATCTCACTATCTATTATCTTTGTTGTGAGACAGTGTGTACTTCTGTTTTAAATTACTGTTTTTGATGTATGATTAATACAATAAACTTTAAATAAAAAAGACGTTGTAGATATTACAAAAGGTTATACTTAGATCAATTTTCAAAATCCAAATATTTCATGGTAG
>Glyma15g38010.1 sequence type=CDS gene model=Glyma15g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCCTTGTTGCTCCAAACCAAAAATCTCCGGTTGAAGACGTTGAGGCTCTACATAAGGCTTTCAAAGGATGGGGGACTGATGAGAAGACCGTTATAGCAATATTGGGTCACAGAAATGTTCATCAGAGGCAACAAATCAGAAAGATTTATGAGGAAATTTACCAAGAGGACCTCATCAAACGCCTAGAGTCTGAGCTCTCTGGTGACTTTGAGAGAGCTGTGTACCGTTGGATGCTGGAACCTGCAGATCGTGATGCTGTTTTGGCCAATGTTGCCATCAAGAATGGCAGCAAAGGTTACCATGTGATTGTGGAAATTGCTTGTGTGCTTTCAGCTGAAGAGGTCTTGGCAGTGAAGCGTGCCTATCACAACCGTTACAAGAGATCTTTGGAAGAAGATGTAGCTACTAATACCACTGGTGACATTCGCCAGCTGTTGGTTGGGTTGGTGACCGCATATAGGTATGGTGGAGATGAGATCAATGCAAAATTGGCCAAAACTGAAGCTGATATTCTTCATGAATCTATCAAGGAGAAAAAGGGCAACCATGAAGAAGCCATCAGGATCCTTACTACAAGGAGCAAGACCCAACTTCTGGCAACTTTCAACCGCTACAGAGATGACCATGGCGCTTCTATAACTAAGAAATTGTTGGATAATGCATCCACTGACTTTCAGAAGGCATTGCACACTGCTATTAGATGTATCAATGACCACAAAAAGTACTATGAAAAGGTTCTGCGCAACGCTCTAAAAAATGTTGGAACTGATGAGGATGCACTGACCCGTGTGGTGGTCTCAAGGGCTGAGAAGGACCTCAGGGACATCAAAGAGCGATATTATAAGAGAAACAGTGTTCACCTTGAGGATGCAGTGGCCAAGGAAATCTCAGGGGACTACAAGAAATTCATCCTCACTCTGTTGGGGAAGGAAGATTGA >Glyma15g38010.2 sequence type=CDS gene model=Glyma15g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCCTCATTGCTCCCATCACCTTTTCGCCTGGTTTAGATGCAGAAGCTCTTAGAAAAGCTTTCCAAGGATGGGGGACTGATGAGAAGACCGTTATAGCAATATTGGGTCACAGAAATGTTCATCAGAGGCAACAAATCAGAAAGATTTATGAGGAAATTTACCAAGAGGACCTCATCAAACGCCTAGAGTCTGAGCTCTCTGGTGACTTTGAGAGAGCTGTGTACCGTTGGATGCTGGAACCTGCAGATCGTGATGCTGTTTTGGCCAATGTTGCCATCAAGAATGGCAGCAAAGGTTACCATGTGATTGTGGAAATTGCTTGTGTGCTTTCAGCTGAAGAGGTCTTGGCAGTGAAGCGTGCCTATCACAACCGTTACAAGAGATCTTTGGAAGAAGATGTAGCTACTAATACCACTGGTGACATTCGCCAGCTGTTGGTTGGGTTGGTGACCGCATATAGGTATGGTGGAGATGAGATCAATGCAAAATTGGCCAAAACTGAAGCTGATATTCTTCATGAATCTATCAAGGAGAAAAAGGGCAACCATGAAGAAGCCATCAGGATCCTTACTACAAGGAGCAAGACCCAACTTCTGGCAACTTTCAACCGCTACAGAGATGACCATGGCGCTTCTATAACTAAGAAATTGTTGGATAATGCATCCACTGACTTTCAGAAGGCATTGCACACTGCTATTAGATGTATCAATGACCACAAAAAGTACTATGAAAAGGTTCTGCGCAACGCTCTAAAAAATGTTGGAACTGATGAGGATGCACTGACCCGTGTGGTGGTCTCAAGGGCTGAGAAGGACCTCAGGGACATCAAAGAGCGATATTATAAGAGAAACAGTGTTCACCTTGAGGATGCAGTGGCCAAGGAAATCTCAGGGGACTACAAGAAATTCATCCTCACTCTGTTGGGGAAGGAAGATTGA
>Glyma15g38010.1 sequence type=predicted peptide gene model=Glyma15g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLVAPNQKSPVEDVEALHKAFKGWGTDEKTVIAILGHRNVHQRQQIRKIYEEIYQEDLIKRLESELSGDFERAVYRWMLEPADRDAVLANVAIKNGSKGYHVIVEIACVLSAEEVLAVKRAYHNRYKRSLEEDVATNTTGDIRQLLVGLVTAYRYGGDEINAKLAKTEADILHESIKEKKGNHEEAIRILTTRSKTQLLATFNRYRDDHGASITKKLLDNASTDFQKALHTAIRCINDHKKYYEKVLRNALKNVGTDEDALTRVVVSRAEKDLRDIKERYYKRNSVHLEDAVAKEISGDYKKFILTLLGKED* >Glyma15g38010.2 sequence type=predicted peptide gene model=Glyma15g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLIAPITFSPGLDAEALRKAFQGWGTDEKTVIAILGHRNVHQRQQIRKIYEEIYQEDLIKRLESELSGDFERAVYRWMLEPADRDAVLANVAIKNGSKGYHVIVEIACVLSAEEVLAVKRAYHNRYKRSLEEDVATNTTGDIRQLLVGLVTAYRYGGDEINAKLAKTEADILHESIKEKKGNHEEAIRILTTRSKTQLLATFNRYRDDHGASITKKLLDNASTDFQKALHTAIRCINDHKKYYEKVLRNALKNVGTDEDALTRVVVSRAEKDLRDIKERYYKRNSVHLEDAVAKEISGDYKKFILTLLGKED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
