SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24830 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8531226-8533266 FORWARD LENGTH=593 | SoyBase | E_val: 7.00E-78 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_B9SPQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SPQ9_RICCO | SoyBase | E_val: 2.00E-83 | ISS |
| UniRef100_I1MIR7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MIR7_SOYBN | SoyBase | E_val: 5.00E-165 | ISS |
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Glyma15g37750 not represented in the dataset |
Glyma15g37750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g26751 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g236000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g37750.2 sequence type=CDS gene model=Glyma15g37750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGGGATTCGAATGAGTGACTTTTGGGTTAAATGTTGCAGCGAGAACCTATGTTTGGTAAAGACAGGTCTAACTATAGGATATGCATGTGAATCCAAGTATGCTGAAGATACAGCTACTATTAGGCGTTTGTGCTTAGATGGTAAGTTGGAAGCAGCTGTTTGGCTTCAGGGGAAAATGGTGCAGAAAGGTGTTGTTCCTGATGTGTTTACCCACAGCCATATTGTAAATGGGCTTTGCAAAATTGGTCTTCCGGACAAGGCGGATTTGGTTGTTCGAGAGATGCTAGAATTTGGTCCTTGTCCCAACTGTGCCACTTATAACACTTTAATTAAGGGCTATTGCGCTGTTAATGGCGTGGATAGGGCTTTGTATCTGTTCTCCACCATGGCCTATGCTGGGATTCTGCCAAACAGGGTTACTTGTAGCATACTGGTGTGTGCACTGTGTGAGAAAGGTCTTCTGATGGAAGCTAAAAGCATGCTTGTAGAAATATTAAAGGATGACGACGAGAAAGGTATACCTGATTTAGTTACCTCTTCTATATTTATGGATAGCTACTTTAAGAATGGAGCAATTATTCAGGCTCTCAATCTTTGGAATCAGATGCTTCAAAATTGTACAAAAGTTGATGTTGTAGCTTATAATGTTCTTATCAATGGATTTTGCAAGAGTCAACTAATGAACCTTGCATATGGATATGCATGTGCTGCTTGTAATATAGGACGGCCTGATTTTGCTCTTCAATTACATAATGAGATGGTGCAGAGGGGGTATGAACCAGATTTAATAACTTATACTGAACTTGTTAGGGGGTTCTGTATTAGAGGTAAGATGAAAGAGGCAGAAGAGCTCTATGCCAAAATACTAAAATCTGGTTTGTTGAATGATCATGTTCCAGTTCAGATTATTTTTAATAAGTACTGCAAATTGGAGGAACCAGTTAGAGCATTTAAGTTTTATCAAGATTGGTTGGAAAGTAAAAAAGGACATCATGAAGTTCTGGAAAAAGAAAGCTGCATTTGCTCGATTGAAATGTTGGCAGTAGCTCATACAAGTAATGAACAGTCCAGGCCACAACCATCAACCAAAGCTATATGTGAGGATGTGTATGTGATCATTGGCTTGTTTCCTGATTTTAGCTTTTAG
>Glyma15g37750.2 sequence type=predicted peptide gene model=Glyma15g37750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQGIRMSDFWVKCCSENLCLVKTGLTIGYACESKYAEDTATIRRLCLDGKLEAAVWLQGKMVQKGVVPDVFTHSHIVNGLCKIGLPDKADLVVREMLEFGPCPNCATYNTLIKGYCAVNGVDRALYLFSTMAYAGILPNRVTCSILVCALCEKGLLMEAKSMLVEILKDDDEKGIPDLVTSSIFMDSYFKNGAIIQALNLWNQMLQNCTKVDVVAYNVLINGFCKSQLMNLAYGYACAACNIGRPDFALQLHNEMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQIIFNKYCKLEEPVRAFKFYQDWLESKKGHHEVLEKESCICSIEMLAVAHTSNEQSRPQPSTKAICEDVYVIIGLFPDFSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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