|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G63490 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family | chr3:23444269-23445777 FORWARD LENGTH=291 | SoyBase | E_val: 4.00E-32 | ISS |
GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
PTHR23105 | Panther | 60S RIBOSOMAL PROTEIN L10A - RELATED | JGI | ISS | |
PTHR23105:SF5 | Panther | 50S RIBOSOMAL PROTEIN L1P | JGI | ISS | |
PF00687 | PFAM | Ribosomal protein L1p/L10e family | JGI | ISS | |
UniRef100_I1MIQ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIQ9_SOYBN | SoyBase | E_val: 5.00E-47 | ISS |
UniRef100_P49208 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L1, chloroplastic (Fragment) n=1 Tax=Pisum sativum RepID=RK1_PEA | SoyBase | E_val: 2.00E-31 | ISS |
Glyma15g37611 not represented in the dataset |
Glyma15g37611 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.15g235200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g37611.1 sequence type=CDS gene model=Glyma15g37611 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTGGGTCAAGATGTTTCTGTCGGGTTCACTCCAACCATGTATACTATTCTTTTCCCTCACTTCTGGCTCCCGCTGTGTGCTCTGCTTCACACTACTGCCTCTCATCCACTCCCTATCGCTGCAATTTTATATTTGCCATTTTGGTTCCGGCCTTGCCTCTTAAGCCTCTTAAGAGGGACAGGACGAGCTCTAAGAGGTCCTTGGAAATTCAACAATTGAGGGAGCGTAAGAAAGAGTATGACTTGAAGACAGCAATATCTTTGGTTAAAGAAACAGCTAAAACCAAGTTTGGAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAACGATCAACAATTAAGAGCAACAGTGAGTCTCCTGCTACTTGCTTGA
>Glyma15g37611.1 sequence type=predicted peptide gene model=Glyma15g37611 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSGSRCFCRVHSNHVYYSFPSLLAPAVCSASHYCLSSTPYRCNFIFAILVPALPLKPLKRDRTSSKRSLEIQQLRERKKEYDLKTAISLVKETAKTKFGETVEAHFRLNIDPKYNDQQLRATVSLLLLA*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||