Glyma15g37420 - SoyBase

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Report for Sequence Feature Glyma15g37420

Feature Type:	gene_model
Chromosome:	Gm15
Start:	43219798
stop:	43224415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g37420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12600	AT	Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 16 \| chr3:4004809-4005995 FORWARD LENGTH=180	SoyBase	E_val: 7.00E-80	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2839	KOG	Diadenosine and diphosphoinositol polyphosphate phosphohydrolase	JGI		ISS
PTHR12629	Panther	DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
UniRef100_G7LGT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7LGT1_MEDTR	SoyBase	E_val: 9.00E-104	ISS
UniRef100_I1MIP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIP6_SOYBN	SoyBase	E_val: 5.00E-127	ISS

Expression Patterns of Glyma15g37420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g37420

Paralog	Evidence	Comments
Glyma13g26490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g37420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g233700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g37420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g37420

Limit To All Plant Sequences

>Glyma15g37420.1   sequence type=CDS   gene model=Glyma15g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAATTGGTGGCCCGTACGGGCCGGCATCAGCAGCGGTACGAGAACGGTTACCGTCTTGTTTCCGGGTGTGTTCCATTTAGATATAAAAGTTCTAATGATTGTGGAGACTCTAGTTCCGAGAAGATTGTTGAAGTGCTTATGATTAATTCACCAAGCGGACCTGGTCTTTTGTTTCCAAAGGGAGGTTGGGAGAATGACGAAACTGTTGAGCAGGCAGCTGTAAGGGAAGCTGTAGAAGAAGCAGGAGTTCGAGGAGACATAATGGATTTTCTTGGACACTACGAGTTTAGGAGTAAGACCCATCAAGATGAGTTTAGTCCAGAAGGTTTATGTAAAGCAGCAATGTTTGCTTTATTTGTTAAGGAGGAACTTGAGTTATGGCCTGAACAAAGTACCAGAAATAGGAGATGGCTAGCTGTGTCGGAAGCACTTGGAAGCCTCCGGCATGCATGGATGAGGGACGCCCTGGAATGCTTCTGTAAATGGCAAGAGGATAAGTTGGCGAATGGAACGAAAGAATAA

Predicted protein sequences of Glyma15g37420

Limit To All Plant Sequences

>Glyma15g37420.1   sequence type=predicted peptide   gene model=Glyma15g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSELVARTGRHQQRYENGYRLVSGCVPFRYKSSNDCGDSSSEKIVEVLMINSPSGPGLLFPKGGWENDETVEQAAVREAVEEAGVRGDIMDFLGHYEFRSKTHQDEFSPEGLCKAAMFALFVKEELELWPEQSTRNRRWLAVSEALGSLRHAWMRDALECFCKWQEDKLANGTKE*

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