Glyma15g37170 - SoyBase

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Report for Sequence Feature Glyma15g37170

Feature Type:	gene_model
Chromosome:	Gm15
Start:	42791338
stop:	42795410
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g37170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32940	AT	Annotation by Michelle Graham. TAIR10: Argonaute family protein \| chr2:13972218-13976856 REVERSE LENGTH=878	SoyBase	E_val: 7.00E-148	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0030422	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0035197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: siRNA binding	SoyBase	N/A	ISS
KOG1041	KOG	Translation initiation factor 2C (eIF-2C) and related proteins	JGI		ISS
PTHR22891	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	JGI		ISS
PF02170	PFAM	PAZ domain	JGI		ISS
PF02171	PFAM	Piwi domain	JGI		ISS
UniRef100_B9T7B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9T7B0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MIN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MIN1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g37170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g37170

Paralog	Evidence	Comments
Glyma13g26240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g37170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g37170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g37170

Limit To All Plant Sequences

>Glyma15g37170.1   sequence type=CDS   gene model=Glyma15g37170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAGAGGAATGATGGAGGAAATTCCTGGGAATGAAGAAGCTGCTGAGCCTCCAGCATCATCTCAATCACCTGCTGATGTGCCACATAATATGGAAACAGAACGAATGACTGCTACAAAGTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAACACTTACCTTTACTTGTGAATCTCTTCGAAGTTGTTGTAAATGTTCCAGACACAGTATTTTTCCAGTATAGTGTTTCTATTAACTTTGAAGATAAACGAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAAGCTTTATCAAACATACTCTTCTGAACTTGGTTGCAAAAGGTTTGTATACGATGGAGGGAAAACTTTGTACACAGTGGGTCCTCTGCCGCTAAATAAGTATGAGCTCAAAGTGTTGCTGGAGAAATCATTTACAAAACGGTATGTCTTGTGTATGACTGTCTTATTTGCATCATGTTTTATTTTTCCCTTAAATCTCACTGTTCCAACTCTAGCAGCAGTGCCGACTGCGAGAGTCCTGGTGCTAACGGAAGCCTTCATGAGGAAACTAAAAGAACCCCGTTATATTTTTCCCTTACACTATTTATTTTTTCTAGATGTGTCAACAACTGTTATCATAAAACCTGGACCTGTAATAGAATCCCATTATATTGACTGGGAAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAATCTACTCATCATAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGTATTCAGCAACTTTTTAATATGAAGGTTAAAAATGATGACGACAATAGTGAAGGGCAGACAGTGGATATTACTGTTTATGAATATTTTGCCAAACGCTGTGGCATAGAGCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCAAAATGGCCCATCTATCTTCCCTTGGAGCTATGTTCACTTGTTTCCCTCCAACGGTATACAAAGGTTTTATCTCCGATGCAAAGAGCGTCTTTAGTTGAAAAATCATGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAGTGCTGTAGGAAATTGCTACAACGATGATCCTGTTCTTTCTTCATGTGGCATTTTTATTGAGAAACAATTGAGTCTGATTGAAGGTTGTGTTCTTGAGACACCAAAGGTATGCATTGATCGATTATATATTTCACATTTTTATAAAAGAGAAAATGGTGTAAAGGAGGTGGTTAGTCAAGTGTCTAACATTGAACGGCCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTGAATAGAGAACCAAAGTTGATTCTGTGGCCTTGGAAAAAGAAGTGTTTGAGTGAAATTGGGGTTGTCACACAGTGCATTGCCCCTGTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGACAATAGAGCATTCTGGGCATCTTCCCCTGATTAAGGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAATTTGCCTGGTCGATTAGATAGGCATTTGAGCTGTGGAAGCATGATGTGGCCAAGTATTAGAATTGCAGCTGAAATTGGCAAAATGGAAACAATGACATATATCATGGGGGGGGGGGGGGGGGGAGGGTGGGAGAGTGACACTCATACAGGCTGTGCTAACATCAATTCCAATTTATCTTTTCTCTTTTTTCAGGGTGCCAAAATCAGTGGTGGACAAATTCTTAAGGCTGCAGCGAAAGTTTTGGAATCCAAATACGGTGGATGGAGGAACCTTGATGAACCAGGAAACACAGGAAAGCAATTTGTTTGGTGGAGGGATCTAAAACAAGCTTTTAATCAATCACAACAAGGAATGGTCATTCAAAATAACATGAGATGGAAGGTGGGAGGTGAAAATGTTCCAGAAAATGTTCCTCCTGGGATGGTTGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTACATTATTTGTCGACCAATTAAATTGCTGATGTTTCAACTTTCTCACGGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTTATCCATTCACTGTCCTATGTGAACCAAAGGAGCACAATTGCAACCTCAGTTGTGGCACCCATATGTTATGCTCACCATGCTTCAGAGGGAAACATTCCCATCCCTGAGCTTCCAATGTTGCATAGGAATGTCAGGAGTTCCATGTTCTTCTGTTGA

Predicted protein sequences of Glyma15g37170

Limit To All Plant Sequences

>Glyma15g37170.1   sequence type=predicted peptide   gene model=Glyma15g37170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LRGMMEEIPGNEEAAEPPASSQSPADVPHNMETERMTATKYSIISRNGVGTTGKHLPLLVNLFEVVVNVPDTVFFQYSVSINFEDKRAVESKGIGRKVIDKLYQTYSSELGCKRFVYDGGKTLYTVGPLPLNKYELKVLLEKSFTKRYVLCMTVLFASCFIFPLNLTVPTLAAVPTARVLVLTEAFMRKLKEPRYIFPLHYLFFLDVSTTVIIKPGPVIESHYIDWEKAKKMLKNLRVQSTHHNQEFKISGLSEKPCIQQLFNMKVKNDDDNSEGQTVDITVYEYFAKRCGIELTSSAYLPCLDVGKPKWPIYLPLELCSLVSLQRYTKVLSPMQRASLVEKSCQKPQDRIKILKSAVGNCYNDDPVLSSCGIFIEKQLSLIEGCVLETPKVCIDRLYISHFYKRENGVKEVVSQVSNIERPYTLIEEEPQLRKSNPVARVERMFDLLASKLNREPKLILWPWKKKCLSEIGVVTQCIAPVKITDQYLTNVLLKINSKLGGINSLLTIEHSGHLPLIKDTPTMILGMDVSHNLPGRLDRHLSCGSMMWPSIRIAAEIGKMETMTYIMGGGGGGGWESDTHTGCANINSNLSFLFFQGAKISGGQILKAAAKVLESKYGGWRNLDEPGNTGKQFVWWRDLKQAFNQSQQGMVIQNNMRWKVGGENVPENVPPGMVVDTTITHPRNYDFYIICRPIKLLMFQLSHGTSRPVHYHVLLDEIGFSADGLQNFIHSLSYVNQRSTIATSVVAPICYAHHASEGNIPIPELPMLHRNVRSSMFFC*

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