SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32940 | AT | Annotation by Michelle Graham. TAIR10: Argonaute family protein | chr2:13972218-13976856 REVERSE LENGTH=878 | SoyBase | E_val: 7.00E-148 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0035197 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: siRNA binding | SoyBase | N/A | ISS |
| KOG1041 | KOG | Translation initiation factor 2C (eIF-2C) and related proteins | JGI | ISS | |
| PTHR22891 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | JGI | ISS | |
| PF02170 | PFAM | PAZ domain | JGI | ISS | |
| PF02171 | PFAM | Piwi domain | JGI | ISS | |
| UniRef100_B9T7B0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9T7B0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MIN1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MIN1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g37170 not represented in the dataset |
Glyma15g37170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g26240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g37170.1 sequence type=CDS gene model=Glyma15g37170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAAGAGGAATGATGGAGGAAATTCCTGGGAATGAAGAAGCTGCTGAGCCTCCAGCATCATCTCAATCACCTGCTGATGTGCCACATAATATGGAAACAGAACGAATGACTGCTACAAAGTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAACACTTACCTTTACTTGTGAATCTCTTCGAAGTTGTTGTAAATGTTCCAGACACAGTATTTTTCCAGTATAGTGTTTCTATTAACTTTGAAGATAAACGAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAAGCTTTATCAAACATACTCTTCTGAACTTGGTTGCAAAAGGTTTGTATACGATGGAGGGAAAACTTTGTACACAGTGGGTCCTCTGCCGCTAAATAAGTATGAGCTCAAAGTGTTGCTGGAGAAATCATTTACAAAACGGTATGTCTTGTGTATGACTGTCTTATTTGCATCATGTTTTATTTTTCCCTTAAATCTCACTGTTCCAACTCTAGCAGCAGTGCCGACTGCGAGAGTCCTGGTGCTAACGGAAGCCTTCATGAGGAAACTAAAAGAACCCCGTTATATTTTTCCCTTACACTATTTATTTTTTCTAGATGTGTCAACAACTGTTATCATAAAACCTGGACCTGTAATAGAATCCCATTATATTGACTGGGAAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAATCTACTCATCATAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGTATTCAGCAACTTTTTAATATGAAGGTTAAAAATGATGACGACAATAGTGAAGGGCAGACAGTGGATATTACTGTTTATGAATATTTTGCCAAACGCTGTGGCATAGAGCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCAAAATGGCCCATCTATCTTCCCTTGGAGCTATGTTCACTTGTTTCCCTCCAACGGTATACAAAGGTTTTATCTCCGATGCAAAGAGCGTCTTTAGTTGAAAAATCATGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAGTGCTGTAGGAAATTGCTACAACGATGATCCTGTTCTTTCTTCATGTGGCATTTTTATTGAGAAACAATTGAGTCTGATTGAAGGTTGTGTTCTTGAGACACCAAAGGTATGCATTGATCGATTATATATTTCACATTTTTATAAAAGAGAAAATGGTGTAAAGGAGGTGGTTAGTCAAGTGTCTAACATTGAACGGCCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTGAATAGAGAACCAAAGTTGATTCTGTGGCCTTGGAAAAAGAAGTGTTTGAGTGAAATTGGGGTTGTCACACAGTGCATTGCCCCTGTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGACAATAGAGCATTCTGGGCATCTTCCCCTGATTAAGGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAATTTGCCTGGTCGATTAGATAGGCATTTGAGCTGTGGAAGCATGATGTGGCCAAGTATTAGAATTGCAGCTGAAATTGGCAAAATGGAAACAATGACATATATCATGGGGGGGGGGGGGGGGGGAGGGTGGGAGAGTGACACTCATACAGGCTGTGCTAACATCAATTCCAATTTATCTTTTCTCTTTTTTCAGGGTGCCAAAATCAGTGGTGGACAAATTCTTAAGGCTGCAGCGAAAGTTTTGGAATCCAAATACGGTGGATGGAGGAACCTTGATGAACCAGGAAACACAGGAAAGCAATTTGTTTGGTGGAGGGATCTAAAACAAGCTTTTAATCAATCACAACAAGGAATGGTCATTCAAAATAACATGAGATGGAAGGTGGGAGGTGAAAATGTTCCAGAAAATGTTCCTCCTGGGATGGTTGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTACATTATTTGTCGACCAATTAAATTGCTGATGTTTCAACTTTCTCACGGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTTATCCATTCACTGTCCTATGTGAACCAAAGGAGCACAATTGCAACCTCAGTTGTGGCACCCATATGTTATGCTCACCATGCTTCAGAGGGAAACATTCCCATCCCTGAGCTTCCAATGTTGCATAGGAATGTCAGGAGTTCCATGTTCTTCTGTTGA
>Glyma15g37170.1 sequence type=predicted peptide gene model=Glyma15g37170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LRGMMEEIPGNEEAAEPPASSQSPADVPHNMETERMTATKYSIISRNGVGTTGKHLPLLVNLFEVVVNVPDTVFFQYSVSINFEDKRAVESKGIGRKVIDKLYQTYSSELGCKRFVYDGGKTLYTVGPLPLNKYELKVLLEKSFTKRYVLCMTVLFASCFIFPLNLTVPTLAAVPTARVLVLTEAFMRKLKEPRYIFPLHYLFFLDVSTTVIIKPGPVIESHYIDWEKAKKMLKNLRVQSTHHNQEFKISGLSEKPCIQQLFNMKVKNDDDNSEGQTVDITVYEYFAKRCGIELTSSAYLPCLDVGKPKWPIYLPLELCSLVSLQRYTKVLSPMQRASLVEKSCQKPQDRIKILKSAVGNCYNDDPVLSSCGIFIEKQLSLIEGCVLETPKVCIDRLYISHFYKRENGVKEVVSQVSNIERPYTLIEEEPQLRKSNPVARVERMFDLLASKLNREPKLILWPWKKKCLSEIGVVTQCIAPVKITDQYLTNVLLKINSKLGGINSLLTIEHSGHLPLIKDTPTMILGMDVSHNLPGRLDRHLSCGSMMWPSIRIAAEIGKMETMTYIMGGGGGGGWESDTHTGCANINSNLSFLFFQGAKISGGQILKAAAKVLESKYGGWRNLDEPGNTGKQFVWWRDLKQAFNQSQQGMVIQNNMRWKVGGENVPENVPPGMVVDTTITHPRNYDFYIICRPIKLLMFQLSHGTSRPVHYHVLLDEIGFSADGLQNFIHSLSYVNQRSTIATSVVAPICYAHHASEGNIPIPELPMLHRNVRSSMFFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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