SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15140 | AT | Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337 | SoyBase | E_val: 1.00E-20 | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0004527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: exonuclease activity | SoyBase | N/A | ISS |
| KOG0542 | KOG | Predicted exonuclease | JGI | ISS | |
| PTHR23044 | Panther | 3'-5' EXONUCLEASE ERI1-RELATED | JGI | ISS | |
| PF00929 | PFAM | Exonuclease | JGI | ISS | |
| UniRef100_G7LHL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ERI1 exoribonuclease n=1 Tax=Medicago truncatula RepID=G7LHL1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MIM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIM2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g36910 not represented in the dataset |
Glyma15g36910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g230500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g36910.1 sequence type=CDS gene model=Glyma15g36910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCCCTTGAAAATTCTGAAAATATGCAAATAAACTGTGAGGCATCTTTAAAATGCCTCCAGAGCAAGGGATTTCCTTGCAATTTTCAAAGTAATGGGAATTCTATGGAAGGCTATACAGAGCTTAAAAATGAGCCTGGTACTCACCCTGCTGGGGATGTTGCTGAGCCTAACTGTCACTTAGGAAGTGAGTTTCTTGAGCCTTCCAATGAATTCCACACAAAACCTACTTATCACCAAAATTACAGCACCTGGACGCCCTGCCATTTTAACTCTCACAAGGTGCAGCAATGCCAAATGAATGCTTTTGAGAGCCATTATTATCCTTATCCTGTTGAGAACCCACTTCAGTATGTTCCTATTAATATGGTTGCACAAGGTTACCCGCGTGAGCAATATCAGGAATTTCAGTATTTTGTGGTGATAGACTTTGAGGCTACTTGTGACAAAGATAAAAATCCCCACCCTCAAGAAATAATTGAGTTTCCATCTGTTATAGTGAGTAGCATCACTGGCCAGCTGGAAGCGTGTTTTCAAACATATGTGAGGCCCACCTGCAATCAGCTTCTGACTGATTTCTGCAAGGATCTGACTGGTATCCAGCAAATTCAGGTGGACAGAGGTGTTACATTGAGTGAGGCTCTACTTAGGCATGACAAATGGCTTGAGAAGAAGGGAATAAAGAATTCCAACTTTGCTGTGGTTACATGGTCCAACTGGGATTGTCGGGTGATGCTTGAATCTGAGTGCCGATTCAAGAAGATACGGAAGCCTCCTTACTTCAACCGCTGGATCAACTTGAGGATTCCTTTCCGTGAGGTATTTGGTGCTGTGAGGTGCAATCTAAAGGAAGCTGTTGAGATAGCCGGCTTGGCCTGGCAGGGACGTGCACATTGCGGCCTTGATGATGCCAAAAATACTGCTCACCTATTGGCACTTCTCATGCACCGGGGTTTTAAATTTTCCATTACCAATTCCATAATGTGGCAGACAGCTGATCGACCACTGATGTGGAAACAGTCACCAGAACAACCAATTGTTTTCCCGCATTCCCCCTATAAAGCAAAGGATATCACTATCCCCGTGGTTCAGTATCACCCTTTCTGCTTTTGTGGGGTGAAAAGCAGCAGGGGCATGGTGAGGAAGCCGTGTCCCAAGCAAGGGAGTCTCTTCTTTGGATGTGGAAATTGGACTGCGACTAGAGGTGCTTGCTGCCGTTACTTTGAATGGGCTTCTAACTGA
>Glyma15g36910.1 sequence type=predicted peptide gene model=Glyma15g36910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMALENSENMQINCEASLKCLQSKGFPCNFQSNGNSMEGYTELKNEPGTHPAGDVAEPNCHLGSEFLEPSNEFHTKPTYHQNYSTWTPCHFNSHKVQQCQMNAFESHYYPYPVENPLQYVPINMVAQGYPREQYQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSITGQLEACFQTYVRPTCNQLLTDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNSNFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLRIPFREVFGAVRCNLKEAVEIAGLAWQGRAHCGLDDAKNTAHLLALLMHRGFKFSITNSIMWQTADRPLMWKQSPEQPIVFPHSPYKAKDITIPVVQYHPFCFCGVKSSRGMVRKPCPKQGSLFFGCGNWTATRGACCRYFEWASN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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