Glyma15g36840 - SoyBase

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Report for Sequence Feature Glyma15g36840

Feature Type:	gene_model
Chromosome:	Gm15
Start:	42284924
stop:	42305080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g36840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27110	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:9538572-9540647 REVERSE LENGTH=691	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF111	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7I8A6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I8A6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MIM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MIM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g36840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g36840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g229600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g36840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g36840

Limit To All Plant Sequences

>Glyma15g36840.1   sequence type=CDS   gene model=Glyma15g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTAGAAAACTACTACCCCTTTTGAGAGCTTGTATGAATTCCAAGTCACTGAAGCAAGGCAAGCTCATTCATCAGAAAGTTGTAACTTTGGGCTTGCAAAATGATATTTTCTTGTGCAAGACCTTGATTAACCAGTATCTTTCTTGCCATTTGTATGATCATGCAAAGTGTGTTTTTGATAACATGGAAAACCCATGTGAGATATCCTTGTGGAATGGCTTGATGGCAGGTTACACTAAGAATTACATGTATGTGGAAGCCCTAGAGCTTTTTGAGAAGTTGTTACACTACCCTTACCTAAAACCTGATAGTTATACTTACCCTAGTGTTTTTAAGGCTTGTGGGGGGCTGCATAGATATGTTTTGGGAAAAATGATTCATACATGTTTGATAAAAACTGGTTTAATGATGGACATTGTTGTTGGAAGCTCTCTTGTCGGTATGTATGGAAAATGCAATGCATTTGAGAAAGCCATATGGCTGTTCAATGAAATGCCTGAGAAGGATGTGGCATGCTGGAATACAGTGATTTCTTGTTATTATCAAAGTGGAAACTTCAAAGATGCCCTAGAATATTTTGGCCTAATGAGAAGATTTGGATTTGAGCCTAATTCGGTTACAATCACAACTGCTATTTCATCTTGTGCTAGACTTTTGGATTTGAACAGGGGAATGGAAATCCATGAGGAATTGATCAATAGTGGTTTTCTGCTGGACAGTTTCATTAGCTCTGCTCTTGTTGACATGTATGGAAAATGTGGTCATCTAGAAATGGCCATAGAGATTTTTGAGCAGATGCCTAAAAAGACTGTTGTTGCTTGGAATTCCATGATTAGTGGATATGGTTTGAAAGGTGACATCATATCATGCATTCAACTTTTTAAGAGGATGTACAATGAAGGAGTCAAGCCAACATTGACTACCTTAAGTAGTTTAATAATGGTTTGTTCACGATCAGCCCGACTACTAGAGGGGAAGTTTGTGCATGGATATACAATACGAAACAGAATACAGCCTGATGTTTTCGTTAATAGTTCACTCATGGATCTATACTTTAAATGTGGAAAGGTAGAGTTAGCCGAAAAGATCTTTAAATTAATACCAAAGTCCAAGGTAGTTTCTTGGAATGTTATGATTTCTGGATATGTGGCTGAAGGGAAACTTTTTGAAGCCCTTGGCCTCTTTAGTGAAATGAGAAAATCGTATGTTGAATCTGATGCTATTACTTTTACCAGTGTTTTGACAGCTTGTTCTCAACTAGCAGCACTAGAAAAAGGTAAAGAGATTCACAATCTGATTATTGAGAAAAAATTGGACAACAATGAAGTGGTTATGGGAGCTCTACTTGATATGTATGCAAAGTGTGGTGCTGTAGATGAAGCATTCAGTGTTTTTAAATGTTTGCCCAAAAGGGATCTGGTGTCCTGGACTTCCATGATTACTGCTTATGGGTCTCATGGTCATGCCTATGGAGCTTTGGAGCTTTTTGCTGAAATGCTGCAGTCCAACGTGAAACCTGATAGGGTTGCTTTTCTTGCTATACTATCTGCTTGTGGCCATGCTGGGTTGGTTGACGAAGGATGCTATTACTTCAATCAAATGATCAATGTTTATGGCATTATACCTAGAGTTGAACATTATTCATGCTTGATTGATCTTCTTGGACGTGCTGGAAGATTGCATGAAGCATATGAGATTCTGCAACAAAACCCTGAAATCAGGGATGATGTTGAGTTGTTAAGCACATTATTTTCTGCATGTCGTCTGCACAGAAATATTGATTTGGGAGCTGAAATTGCAAGAACGCTTATTGATAAGGATCCTGATGATTCATCAACCTATATTCTCTTGTCAAATATGTATGCTTCTGCACATAAGTGGGATGAAGTACGTGTGGTGAGATCAAAGATGAAAGAGCTTGGATTAAAGAAGAATCCAGGGTGTAGTTGGATTGAGATTAATCAGAAGATCCTCCCGTTCTTTGTAGAAGACAATTCACACTTGCATCTAGAACTTGTTTTTAAATGCCTTTCATATCTCTCTGATCACATGGAAGATGAGTCTAAATCATTTACATATCATCTTGATGTTGAAACATTGAGATTATATTAG

Predicted protein sequences of Glyma15g36840

Limit To All Plant Sequences

>Glyma15g36840.1   sequence type=predicted peptide   gene model=Glyma15g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDESKSFTYHLDVETLRLY*

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