SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05270 | AT | Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF869) | chr3:1500803-1502926 REVERSE LENGTH=615 | SoyBase | E_val: 3.00E-98 | ISS |
| PF05911 | PFAM | Plant protein of unknown function (DUF869) | JGI | ISS | |
| UniRef100_G7LFP4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Filament-like plant protein n=1 Tax=Medicago truncatula RepID=G7LFP4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B9EF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B9EF related cluster n=1 Tax=unknown RepID=UPI000233B9EF | SoyBase | E_val: 0 | ISS |
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Glyma15g36801 not represented in the dataset |
Glyma15g36801 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g229500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g36801.1 sequence type=CDS gene model=Glyma15g36801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAGGAGGAGTTGGCTATGGCGCAGGATGTCGTCTAAGAAAAATCTGGGTGAAATTGAGAGTTCTGGCTCAATGTCGTCTCATTCTGAAAGATTTTCCGATGATCAGGTATATCCCACCCAAACTACTCCGTCTCCAGAAGGCACGTGTGAGGCTGCACCAAATGATGAAATTACTGCTGCTCTTTTAAACTCTAGTGCCAAAGAAGATTTGGCAAAGCAGCATGCTAAAGTTGCGGAAGAAGCTGTCTCGGGCTGGGAGAAGGCTGAAAATGAATTATTGATTCTTAAACAACAACTCGACAATGCAAAACAGGAAAACTCAGTTCTTGAAGACCAATTTAGTCATCTTAATGATGCACTCAAGGAGTGTATGAGGGATCTTCAACAAGCTAAAGAAGAACAAGAACCCGATCATGAGTGGAAAGTTGTTGATGCTGCTTCATCAGTTCATTTGGATCTTCAGCAGAGGCTTGGGGATAAGGAGAAAGACAATTCAAGTCTTAAAATAAAGCTACAAAGGGATTTGAGTACTCAGGCTGCTGAAGCAGCAAGCAGGCAACATTTGGAGAGTATAAAGAAGGTGGCTAAGCTAAAAGCTGAGTGCCGTAGACTGAAAGCTATGGCTCGCAAAACATTATCTGCTAATGATCACAGGTCTGTAGCTGCCTCTTCAGTTTATGTAGAGTCTTTTACTGACAGCATGTCAGATATTGGAGAGAGGCAATTGGTAGTTGAAAGTGATATGCAAAAATTAGGAGGTTGGGATGTGAGTGAAGGTGAGCCAAACCACCATGATTCATGGCCATCGGCTTTAATCAAGAAACTTGATCAATTTAACAATGAAAACACCGCTGGAAAAAATAGTATGGTCTTTTCAACCGAGATGAATCTGATGGATGATTTCCTTGAGATGGAAAGGCTTCGTTTTCCTGTGGAACGTACTGCACCTGACCAACTCAATGGTGGCTGTGGAACAAAGAATGCTGAAGTGGAAGCTATTGCTCAAAAGAATGCTGCACTGGAGAAGAAACTAGAGAAAATGGAGGCAGAGAAACTTGAGCTAGAGATGGATCTAACCGAGTGCGAAAAGCAGCTTCAAGCATCACTGAGTAGGATAAAGGAAGTGGAGTTGGAGGTAGTAGAGCTCCAAACTAAGTTGGCTCTTGCAAACAAATCAAACGAAGAACCATACGAGAAACTAAAAGCAACTCATGAAAAGAAAGAGATAGATGAGTCAAAACTCAGAGTTGCTCACACTGAAGCAGAAGAATTGGTTTTGAAAATTTGTTCATTAGAGGAAGAGATTGAGAAAGAACGAGCTTTGTCCGCTGAGAATTTGGCCAAGTGTGGAAAGTTGGAGGATGAGCTCTTGAGAATAAAGAATGAAGCTCAACTCCAAAAAGACACTGAGATTTTTCATGGAGAAGGTGTTAATAGTGAGTTAAAGCAGAGCTTAGCATCTTTCAATGCAGGAGAAGGAACTAGCATTGGCTACAATTGTAAATTTGCTGAATGCCAAAAAACCATCGAATCTCTTGGACTGCAGTTAAAGTCCCTTGCAACATTGGAAGACTTTCTACTTGATTCAGAGAGCCCTATGGAGTTAGCTTGTGAAGTTACACCAGGTCAGTTAGCCCTATGGAGCCCTATGTAA
>Glyma15g36801.1 sequence type=predicted peptide gene model=Glyma15g36801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRRSWLWRRMSSKKNLGEIESSGSMSSHSERFSDDQVYPTQTTPSPEGTCEAAPNDEITAALLNSSAKEDLAKQHAKVAEEAVSGWEKAENELLILKQQLDNAKQENSVLEDQFSHLNDALKECMRDLQQAKEEQEPDHEWKVVDAASSVHLDLQQRLGDKEKDNSSLKIKLQRDLSTQAAEAASRQHLESIKKVAKLKAECRRLKAMARKTLSANDHRSVAASSVYVESFTDSMSDIGERQLVVESDMQKLGGWDVSEGEPNHHDSWPSALIKKLDQFNNENTAGKNSMVFSTEMNLMDDFLEMERLRFPVERTAPDQLNGGCGTKNAEVEAIAQKNAALEKKLEKMEAEKLELEMDLTECEKQLQASLSRIKEVELEVVELQTKLALANKSNEEPYEKLKATHEKKEIDESKLRVAHTEAEELVLKICSLEEEIEKERALSAENLAKCGKLEDELLRIKNEAQLQKDTEIFHGEGVNSELKQSLASFNAGEGTSIGYNCKFAECQKTIESLGLQLKSLATLEDFLLDSESPMELACEVTPGQLALWSPM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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