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Report for Sequence Feature Glyma15g36596

Feature Type:gene_model
Chromosome:Gm15
Start:41932650
stop:41937308
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g36596
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09220AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:2977952-2979466 REVERSE LENGTH=504 SoyBaseE_val: 5.00E-162ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF122Panther PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7JDD7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JDD7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B9EAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B9EA related cluster n=1 Tax=unknown RepID=UPI000233B9EA SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g36596
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g36596 not represented in the dataset
Glyma15g36596 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g36596 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g228600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g36596
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g36596
>Glyma15g36596.2   sequence type=transcript   gene model=Glyma15g36596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATTTAATCGACTCCAGAATCGAATTCATTACTATACAACTTTTTGTGTTGGGAACGAAAAATACATTTATTTAATTTTGAAACGCTCTTTATCTTCTCTTCCTCCTCATAGGCCTTGCTATGAGCTCACTCACGCATTGAAGAAGGCAACGGTCCTCGCAGCTCAAATCTGCAAATTAGGGCTTTTTTTTTTCCCCAACGGCTCAAGCAGATGATGATTCTGATCATACTGTGGAGTTTGCTCAAGCACGACACGTGGCGGTCAACGTCCAATAAAACCGTGACACGTGACAGTCAAGATAATTAATTAACAGTCAACATCCAATTTCGGGGTTGGGAACTTAAATAACGGATTGCAAAAAAATTGGGGGATTAAATTCGTGAATTAAATTATAGGGGGACCAAAATTGAACTCTGAGAAAAATAGGAGGACCAAATTTGCAATTTAGCCTTTTATAAACTTAAGCAAATGGGCCCTGAATCCCTAGGCATTACAGGTTTGAAATGGTTGTGTCACTGTGGAGAAGTCACACTGCTTCATCAGCATTGAACTTGTTCGCCAGTACTTTTTGCCGTTTTTCTTCTGGTTGTGTGGCAGAAGCAATCATATCCACAACCACCATCTCTCCCTGTTCTCCGTATGCTTCATCCTCTCCCAAACCCAAACACCCACAACACTTGATCTCCCTTCTTCCCAGAGACCCTTCTCAACGCCAACCTCTCCAACAAGTCCACTCTCACATCATCACATCTGGCCTCTTCTACAACCCTTTTCACAACACCCTCACTTGTTTACTCCTCTTCAACAACGTCATCCGTTGTTACTCTTTTGGTCCTTATCCCCATGAAGCTCTTCACTTCTTCACATACACCCAACACTGCCACATTTTCTTGACATACCCTTCCCTGGACACCTTCTCTTTTGCCTTCCTCTGCCATGCTTCTGCCAATCCAAATTACACCCACTTTGGGACTCAGCTCCACGCCCTCATTTTCAAGGTTGGTTTTCAGTTTCAAGTCTATGTGCAAACTCGGCTGTTGCAAATGTACTCTAGTTCGGGCCTTTTAGTTGAAGCAGCGCAAGTGTTCTACGAAATGCAGCACAGAAACTTAGTTAGTTGGAATGTTTTTATTACTGGTTTGATTAAATTGGGTGAGGTTGAACTTGCTTGTTCCGTGTTTAATCAGATGCCTGCTCGGAGTGTAGTGTCATGGACTCTTGTTATTGATGGATACACACGAAGGAATCAGCCCATCAAAGCTTTAACTTTGTTTAGGAAAATGATTGAAGTTGATGGTATAGAACCTACGGAAGTTACTCTTTTGACCATTTTTCCAGCTATTGCAAATATCGGGTGCATTAAGATATGCCAATCAGTTCATGGTTATGTAGAGAAAAGAGGCTTCAATGCCTTTGATGTACGCATTACAAATGCATTACTTGATTTGTATGCCAAGTGTGGATGCATAGCTAGTGTGAGTAGATTCTTTCAGGAGATACCTGACCAGAGGAGGAATTTGGTATCATGGACTTCAACTATCTCTGGTTTTGCAATGAATGGGATGGGGAGGGAAGCTCTAGAGAGTTTTGAAAGCATGGAGAAGGCTGGGCTGAGGCCGAACCATGTGACATTCCTCGGTGTTTTGAGTGCCTGTAGTCATGGCGGGCTGGTTGAGGAGGGGATCAATTTCTTTGTTAAAATGGTAAAGGATTGGTGCCTTGTACCAGACATCAAGCACTATGGTTGTGTGATAGATATGCTGGGGAGGGCTGGGAGGTTAGAAGAAGCTGAAAAGATTGCTTTACAGGTACCTCATGAGGTTGCCAATGCTGTGATGTGGAGGACACTGCTGGGTGCTTGTAATGTTCATAACAATGTTGAAATTGGTCAGAGGGTGACCAATAAAATACTGGAGATGGAGAGAGGACACGGTGGAGATTATGTTCTTATGTCCAATATTCTGGTTGGTGTTGGGAGATTTAAGGACGCAGAGAAGTTAAGGGAGATGATAGATAAGAGAATTGCCTTTAAACTTCCTGGCTACAGTTTTGTCTAGATGATATATATGTGCACGCCTGAAAACAGATAGTTCAAGTGCATGTTCATGGCACCCATGAGAGACATTGGCTCTGATAATGGAGCTCCACAAAAGAAGATTGTGTAGTCCCTCAAAAGGAAGGATTGCATCAAACACTTTGCCAGCGTCAGAGAGAAAGTCAAAGTGGGTGTAAACGGCTATGAGCTTGGTGGCCAAGAAGAGCAAACTATGCGCAGTGGTGAAAACCAACTGAGAGTGAAGTTAGAGAGCTTGTTGGAGAGTGAGGCAATATTGAAAAAAAGTGTTGAAGGAGTCATTAAGTTCATCATTATGGGTGACTAAGAATGGTTGCATGTGGATGTGGGTGGTTGAACGAGAGATGATAAAAATGGGTTGGAATCGTTAAAAGAGTTTGCAGAAGCGCTCAAGGGCTGCATTGAGCATTAATGAAGCTTTTATTTCTCTCAGTCGTAGTGCCAGAGATCAAATACTTTCAAGGCCAGGTTTCATGGGAATCGGAAGATGTAGGTGCATATTGGGGTGCTTTCTGGCCCAACTGCAGGGCTTAATAAATATCCTTAAGAAGGTCCAATCCAAACTTGCTGGTGTCATGAAATAGCTGAAGCAGAATGGAAAGGATGAGATTTTTTTTTAAAACTTTTGGAAGGCGGAAAGGATGAGATTATGTATAATAAATTTAGAACAATTTGGAAATGCACCGATAGTGTAATACTGTCATTACTTATAAATGTATGAACGATAAATTTGTTGAGTTTAATAATAATTACCTTAAAAGTTATGTTAAATTAATTTATTGGTT
Coding sequences of Glyma15g36596
>Glyma15g36596.1   sequence type=CDS   gene model=Glyma15g36596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGTCACTGTGGAGAAGTCACACTGCTTCATCAGCATTGAACTTGTTCGCCAGTACTTTTTGCCGTTTTTCTTCTGGTTGTGTGGCAGAAGCAATCATATCCACAACCACCATCTCTCCCTGTTCTCCGTATGCTTCATCCTCTCCCAAACCCAAACACCCACAACACTTGATCTCCCTTCTTCCCAGAGACCCTTCTCAACGCCAACCTCTCCAACAAGTCCACTCTCACATCATCACATCTGGCCTCTTCTACAACCCTTTTCACAACACCCTCACTTGTTTACTCCTCTTCAACAACGTCATCCGTTGTTACTCTTTTGGTCCTTATCCCCATGAAGCTCTTCACTTCTTCACATACACCCAACACTGCCACATTTTCTTGACATACCCTTCCCTGGACACCTTCTCTTTTGCCTTCCTCTGCCATGCTTCTGCCAATCCAAATTACACCCACTTTGGGACTCAGCTCCACGCCCTCATTTTCAAGGTTGGTTTTCAGTTTCAAGTCTATGTGCAAACTCGGCTGTTGCAAATGTACTCTAGTTCGGGCCTTTTAGTTGAAGCAGCGCAAGTGTTCTACGAAATGCAGCACAGAAACTTAGTTAGTTGGAATGTTTTTATTACTGGTTTGATTAAATTGGGTGAGGTTGAACTTGCTTGTTCCGTGTTTAATCAGATGCCTGCTCGGAGTGTAGTGTCATGGACTCTTGTTATTGATGGATACACACGAAGGAATCAGCCCATCAAAGCTTTAACTTTGTTTAGGAAAATGATTGAAGTTGATGGTATAGAACCTACGGAAGTTACTCTTTTGACCATTTTTCCAGCTATTGCAAATATCGGGTGCATTAAGATATGCCAATCAGTTCATGGTTATGTAGAGAAAAGAGGCTTCAATGCCTTTGATGTACGCATTACAAATGCATTACTTGATTTGTATGCCAAGTGTGGATGCATAGCTAGTGTGAGTAGATTCTTTCAGGAGATACCTGACCAGAGGAGGAATTTGGTATCATGGACTTCAACTATCTCTGGTTTTGCAATGAATGGGATGGGGAGGGAAGCTCTAGAGAGTTTTGAAAGCATGGAGAAGGCTGGGCTGAGGCCGAACCATGTGACATTCCTCGGTGTTTTGAGTGCCTGTAGTCATGGCGGGCTGGTTGAGGAGGGGATCAATTTCTTTGTTAAAATGGTAAAGGATTGGTGCCTTGTACCAGACATCAAGCACTATGGTTGTGTGATAGATATGCTGGGGAGGGCTGGGAGGTTAGAAGAAGCTGAAAAGATTGCTTTACAGGTACCTCATGAGGTTGCCAATGCTGTGATGTGGAGGACACTGCTGGGTGCTTGTAATGTTCATAACAATGTTGAAATTGGTCAGAGGGTGACCAATAAAATACTGGAGATGGAGAGAGGACACGGTGGAGATTATGTTCTTATGTCCAATATTCTGGTTGGTGTTGGGAGATTTAAGGACGCAGAGAAGTTAAGGGAGATGATAGATAAGAGAATTGCCTTTAAACTTCCTGGCTACAGTTTTGTCTAG

>Glyma15g36596.2   sequence type=CDS   gene model=Glyma15g36596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGTCACTGTGGAGAAGTCACACTGCTTCATCAGCATTGAACTTGTTCGCCAGTACTTTTTGCCGTTTTTCTTCTGGTTGTGTGGCAGAAGCAATCATATCCACAACCACCATCTCTCCCTGTTCTCCGTATGCTTCATCCTCTCCCAAACCCAAACACCCACAACACTTGATCTCCCTTCTTCCCAGAGACCCTTCTCAACGCCAACCTCTCCAACAAGTCCACTCTCACATCATCACATCTGGCCTCTTCTACAACCCTTTTCACAACACCCTCACTTGTTTACTCCTCTTCAACAACGTCATCCGTTGTTACTCTTTTGGTCCTTATCCCCATGAAGCTCTTCACTTCTTCACATACACCCAACACTGCCACATTTTCTTGACATACCCTTCCCTGGACACCTTCTCTTTTGCCTTCCTCTGCCATGCTTCTGCCAATCCAAATTACACCCACTTTGGGACTCAGCTCCACGCCCTCATTTTCAAGGTTGGTTTTCAGTTTCAAGTCTATGTGCAAACTCGGCTGTTGCAAATGTACTCTAGTTCGGGCCTTTTAGTTGAAGCAGCGCAAGTGTTCTACGAAATGCAGCACAGAAACTTAGTTAGTTGGAATGTTTTTATTACTGGTTTGATTAAATTGGGTGAGGTTGAACTTGCTTGTTCCGTGTTTAATCAGATGCCTGCTCGGAGTGTAGTGTCATGGACTCTTGTTATTGATGGATACACACGAAGGAATCAGCCCATCAAAGCTTTAACTTTGTTTAGGAAAATGATTGAAGTTGATGGTATAGAACCTACGGAAGTTACTCTTTTGACCATTTTTCCAGCTATTGCAAATATCGGGTGCATTAAGATATGCCAATCAGTTCATGGTTATGTAGAGAAAAGAGGCTTCAATGCCTTTGATGTACGCATTACAAATGCATTACTTGATTTGTATGCCAAGTGTGGATGCATAGCTAGTGTGAGTAGATTCTTTCAGGAGATACCTGACCAGAGGAGGAATTTGGTATCATGGACTTCAACTATCTCTGGTTTTGCAATGAATGGGATGGGGAGGGAAGCTCTAGAGAGTTTTGAAAGCATGGAGAAGGCTGGGCTGAGGCCGAACCATGTGACATTCCTCGGTGTTTTGAGTGCCTGTAGTCATGGCGGGCTGGTTGAGGAGGGGATCAATTTCTTTGTTAAAATGGTAAAGGATTGGTGCCTTGTACCAGACATCAAGCACTATGGTTGTGTGATAGATATGCTGGGGAGGGCTGGGAGGTTAGAAGAAGCTGAAAAGATTGCTTTACAGGTACCTCATGAGGTTGCCAATGCTGTGATGTGGAGGACACTGCTGGGTGCTTGTAATGTTCATAACAATGTTGAAATTGGTCAGAGGGTGACCAATAAAATACTGGAGATGGAGAGAGGACACGGTGGAGATTATGTTCTTATGTCCAATATTCTGGTTGGTGTTGGGAGATTTAAGGACGCAGAGAAGTTAAGGGAGATGATAGATAAGAGAATTGCCTTTAAACTTCCTGGCTACAGTTTTGTCTAG
Predicted protein sequences of Glyma15g36596
>Glyma15g36596.1   sequence type=predicted peptide   gene model=Glyma15g36596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVSLWRSHTASSALNLFASTFCRFSSGCVAEAIISTTTISPCSPYASSSPKPKHPQHLISLLPRDPSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQHCHIFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVYVQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVLMSNILVGVGRFKDAEKLREMIDKRIAFKLPGYSFV*

>Glyma15g36596.2   sequence type=predicted peptide   gene model=Glyma15g36596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVSLWRSHTASSALNLFASTFCRFSSGCVAEAIISTTTISPCSPYASSSPKPKHPQHLISLLPRDPSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQHCHIFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVYVQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVLMSNILVGVGRFKDAEKLREMIDKRIAFKLPGYSFV*






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