Glyma15g36085 - SoyBase

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Report for Sequence Feature Glyma15g36085

Feature Type:	gene_model
Chromosome:	Gm15
Start:	41099884
stop:	41100375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g36085

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05200	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:1477377-1478573 FORWARD LENGTH=398	SoyBase	E_val: 3.00E-15	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22764	Panther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).	JGI		ISS
PTHR22764:SF21	Panther	OS08G0484200 PROTEIN	JGI		ISS
UniRef100_I1L390	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L390_SOYBN	SoyBase	E_val: 8.00E-63	ISS
UniRef100_Q2HTN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=2 Tax=Medicago truncatula RepID=Q2HTN3_MEDTR	SoyBase	E_val: 8.00E-14	ISS

Expression Patterns of Glyma15g36085

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g36085 not represented in the dataset	Glyma15g36085 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g36085 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g226900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g36085

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g36085

Limit To All Plant Sequences

>Glyma15g36085.1   sequence type=CDS   gene model=Glyma15g36085   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCATTGTACTCTTCTTCCTCCTAACATCATCATCATCATCATCATCATCATCATATTCATACGCTCAATCCCCTGTAGCACCAGCAGTGGCTCATGTCCCTTCCACCAGAGCAACGCTTCCCATGTTACTCGTGATCTTCCTCTTCGCCCTCCCCTTCACTGCATTATGCTCCATCTTCATTTGCTACTGCTCCCATGAAGAACAACCCCAGGTGCTTCCAGAAGCCACGCGTTCCACGCCGCGCGGAGTCGACCCGCGTGTGCTCGCCACATGTCCCATCACGTCCTACTCCACAGTTAAAATGAGGACGCCGCAAAACCCTGTAGTGAGTTTGGCGGAGTTCGACGACGCCAACGCGCTTCGCTTGCTACCTAAGTGCAGTCACGTGTTCCACACACACTGCATCGACGCGTCTCTCAGTAGCGCTTTATCGAAGAAAATCAAACACAGAAAAAAAAATTATGGAATGAATCGATGGCAGTAA

Predicted protein sequences of Glyma15g36085

Limit To All Plant Sequences

>Glyma15g36085.1   sequence type=predicted peptide   gene model=Glyma15g36085   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFIVLFFLLTSSSSSSSSSYSYAQSPVAPAVAHVPSTRATLPMLLVIFLFALPFTALCSIFICYCSHEEQPQVLPEATRSTPRGVDPRVLATCPITSYSTVKMRTPQNPVVSLAEFDDANALRLLPKCSHVFHTHCIDASLSSALSKKIKHRKKNYGMNRWQ*

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