|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G04400 | AT | Annotation by Michelle Graham. TAIR10: cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612 | SoyBase | E_val: 7.00E-28 | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
GO:0006338 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin remodeling | SoyBase | N/A | ISS |
GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
GO:0009638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phototropism | SoyBase | N/A | ISS |
GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
GO:0010617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian regulation of calcium ion oscillation | SoyBase | N/A | ISS |
GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0009882 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity | SoyBase | N/A | ISS |
GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
PTHR11455 | Panther | DNA PHOTOLYASE | JGI | ISS | |
PF03441 | PFAM | FAD binding domain of DNA photolyase | JGI | ISS | |
UniRef100_D0FZ19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Cryptochrome2 n=1 Tax=Glycine max RepID=D0FZ19_SOYBN | SoyBase | E_val: 1.00E-28 | ISS |
UniRef100_D0FZ19 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cryptochrome2 n=1 Tax=Glycine max RepID=D0FZ19_SOYBN | SoyBase | E_val: 1.00E-28 | ISS |
Glyma15g35371 not represented in the dataset |
Glyma15g35371 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.15g223700 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g35371.1 sequence type=CDS gene model=Glyma15g35371 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCGCCAATTTTGCTGTGAAAATGTTGCTTCTACCCTGGAAATGGGGAATGAAATATTTCTGGGACACACTTCTTGATGCTGACCTTGAAAGTAATATCTTGGGATGGCAGTATATCTCAGGAGGCTTAACAGATGGCCATGAGCTTGAGCGCTTGGACAATCCGAAGGTTTGTCATGTTTTCCTTCATTCAAAGGATTTACAGTTTGCTTGGTATCACTCAGATGTGATTATTTTATATTCCCTAGTTTAA
>Glyma15g35371.1 sequence type=predicted peptide gene model=Glyma15g35371 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVANFAVKMLLLPWKWGMKYFWDTLLDADLESNILGWQYISGGLTDGHELERLDNPKVCHVFLHSKDLQFAWYHSDVIILYSLV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||