Glyma15g35330 - SoyBase

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Report for Sequence Feature Glyma15g35330

Feature Type:	gene_model
Chromosome:	Gm15
Start:	39949100
stop:	39964424
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g35330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G07050	AT	Annotation by Michelle Graham. TAIR10: cycloartenol synthase 1 \| chr2:2924629-2930295 FORWARD LENGTH=759	SoyBase	E_val: 0	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016866	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity	SoyBase	N/A	ISS
GO:0016871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cycloartenol synthase activity	SoyBase	N/A	ISS
KOG0497	KOG	Oxidosqualene-lanosterol cyclase and related proteins	JGI		ISS
PTHR11764	Panther	SQUALENE CYCLASES-RELATED	JGI		ISS
PTHR11764:SF3	Panther	CYCLOARTENOL SYNTHASE-RELATED	JGI		ISS
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI		ISS
UniRef100_I1MII5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MII5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1ERD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lanosterol synthase n=1 Tax=Lotus japonicus RepID=Q1ERD3_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g35330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g35330 not represented in the dataset	Glyma15g35330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g35330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g223600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g35330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g35330

Limit To All Plant Sequences

>Glyma15g35330.2   sequence type=CDS   gene model=Glyma15g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCCCTCACCAACTGCTGCCGCATCAGGACCGCAACTCCCTCACTGGTGTCATTCTGTTCAATATTGGAGAGGATGCAAGGCAGGCTTGATGGAATCAACAATAGTGACAGCAACAAGGGCGATGAAAGGGGTTAAGCGAGCAAATGATGTAGTGGAGTTTGAGGAAGTTAGGGTAATTGGTTTATCAGTTATTGGAGCCCTTAATGAAATACTGACACCTGAGCATCAAAGTGAAATACGTCGCTATCTGTTCAATCACCAGAACGAAGATGGAGGGTGGGGAATGCATATAGAAGGGTCCAGCATAATGTTTACATCAGCTTTGAACTATGTGACCTTAAGATTGCTTGGAGAAGACATTAATGGTGGAGAAGGTGCTATACAAAAAGCAAGGACATGGATTCTTGATCATGGTGGAGCCACTTATATTCCTTCCTGGGGAAAACTCTGGCTTTCGGTGCTTGGCGTATATGAATGGAGCGGAATGAAGCCAATCCCACCAGAAATATGGTTGTTTCCCTATTTTGTTCCTTTATCCAGAATATGGAGTCACGCTCGGCAAGTGTATCTACCCATGTCTTATTTATATGGTAAAAGATTCATAGGTCCTATAAATGCACTTGTTTTATCCCTTAGAAGAGAGCTCTACACCCTTCCTTATAATCTCCTCGACTGGAATCAAGCTAAAAATTCATGTGCCAAGGAAGATATGTCTCATCCAAGCTCAATGATTCAAAATATTTTATGGGATTCTTTTCACAGTATAGGAGAACCTCTTCTCATGCACTGGCCTTTCTCTAAGCTAAGACAAAAAGCTCTTTGTCATGTAATGGAACATATACACTACGAGGATGAAAATACAAACTACATTTGTCTTGCTCCCATTAGCAAGGTATTAAACATGGTTTGTTGTTGGTTGGAGAATCCCAATTCCCAAACATTTAAGCGTCACATTCCAAGAATCAAAGACTATCTCTGGGTGGCTGAGGATGGAATGAAAATGCAGGCATATGGTGGTTCTCAATTATGGGACACGGTTTTTTCTATTCAAGCAATCTTAGCTACTAATCTTAAGGATGAATATGGTTCCATGCTTAAGAAAGCAAATAATTTCATAAAATGCTCACAGATTACAACAAACAGTTCTGGTACTCCAAGTGACTGGTATCGCCACATTTCTAAAGGTGGTTGGACTTTCAACTGCAGACAATGGTTGGCCAGTGCCGCCATTTTGTTATCAAACATGTCATTTGATATTGTTGATAGAGCAATGGAAGTAGAACAACTATATGATGGTGTTAATTGGATTTTATCCATGCAGAATAAAAATGGCGGATTCGCAGGCTTTGAACTTACAAGATCTTATGCATGGCTAGAGAAATTAAATCCAACTGAAACATTTGAAGATGTGATGATCGATCGCCAGTTCGTAGAATGTACTACATCAGCAATTGGAGGTCTTGCCTTATTCACACAACGATATCCGGGGCACAGAAAGAAAGAAATAGAAATTTGTATTGCTAAGGCGGCAAACTATATTGAAAGCATGCAGTTAGCTGATGGCTCATGGTACGGGTCATGGGGAGTCTGCTATACTTATGGAACATGGTTTGGAATAAAGGGACTCATCGTTGCCGGTAAGAGTTATCAAGATAGTCAAAGCATTAGAAGAGGATGTGAATTTTTGCTTTCCAAACAACAACTTTGTGGTGGTTGGGGAGAGAGCTACATCACATGCCAAACGATGGTATACACAAATTTGGAAGGAAACAAGTCTAATGTAGTGAACACTGCATGGGCTATGTTGGCACTTATTGAAGCAGGGCAGGCAGAAAGAGATCCAGCCCCATTGCATCATGCGGCCAAGGTTTTAATCGATTCACAACTAGAAAACGGAGAGTTTCCTCAACAGGCTCCCTCTGCATACAGAAACATCTTTCCCATATGGGCCCTTGGAGAATATCGTAGTCGTGTACTACTTTGTCCTAGCAAGTAA

Predicted protein sequences of Glyma15g35330

Limit To All Plant Sequences

>Glyma15g35330.2   sequence type=predicted peptide   gene model=Glyma15g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPSPTAAASGPQLPHWCHSVQYWRGCKAGLMESTIVTATRAMKGVKRANDVVEFEEVRVIGLSVIGALNEILTPEHQSEIRRYLFNHQNEDGGWGMHIEGSSIMFTSALNYVTLRLLGEDINGGEGAIQKARTWILDHGGATYIPSWGKLWLSVLGVYEWSGMKPIPPEIWLFPYFVPLSRIWSHARQVYLPMSYLYGKRFIGPINALVLSLRRELYTLPYNLLDWNQAKNSCAKEDMSHPSSMIQNILWDSFHSIGEPLLMHWPFSKLRQKALCHVMEHIHYEDENTNYICLAPISKVLNMVCCWLENPNSQTFKRHIPRIKDYLWVAEDGMKMQAYGGSQLWDTVFSIQAILATNLKDEYGSMLKKANNFIKCSQITTNSSGTPSDWYRHISKGGWTFNCRQWLASAAILLSNMSFDIVDRAMEVEQLYDGVNWILSMQNKNGGFAGFELTRSYAWLEKLNPTETFEDVMIDRQFVECTTSAIGGLALFTQRYPGHRKKEIEICIAKAANYIESMQLADGSWYGSWGVCYTYGTWFGIKGLIVAGKSYQDSQSIRRGCEFLLSKQQLCGGWGESYITCQTMVYTNLEGNKSNVVNTAWAMLALIEAGQAERDPAPLHHAAKVLIDSQLENGEFPQQAPSAYRNIFPIWALGEYRSRVLLCPSK*

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