Glyma15g35230 - SoyBase

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Report for Sequence Feature Glyma15g35230

Feature Type:	gene_model
Chromosome:	Gm15
Start:	39775178
stop:	39778491
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g35230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54960	AT	Annotation by Michelle Graham. TAIR10: pyruvate decarboxylase-2 \| chr5:22310858-22312681 REVERSE LENGTH=607	SoyBase	E_val: 3.00E-71	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004737	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
PTHR18968	Panther	THIAMINE PYROPHOSPHATE ENZYMES	JGI		ISS
PTHR18968:SF4	Panther	2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE	JGI		ISS
UniRef100_I1M1V8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1V8_SOYBN	SoyBase	E_val: 4.00E-86	ISS
UniRef100_P51850	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate decarboxylase isozyme 1 n=1 Tax=Pisum sativum RepID=PDC1_PEA	SoyBase	E_val: 1.00E-80	ISS

Expression Patterns of Glyma15g35230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g35230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g35230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g35230

Limit To All Plant Sequences

>Glyma15g35230.1   sequence type=CDS   gene model=Glyma15g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCTTGATCTCTACTCCATTCCCCAGAGCGGTCGAAAAGCATTTTGCATCACCGCCGTCGAGATCTCTCTTCCTTTCATATGCGGCATTGACGTCGCCGTCATCCTTTGCAAAATCGTGGATGGCGTCGACAAAGCCGAATTCCCACAGTTCCTCATCTTCATGGGAGTCTCCCTTTCCATCACCGCATTCCCTGTGCTCGCGCGCATCCTAGCGAAGCTCAAGCTCTTCACCATGTGCGTGGGAGAGACCACCATGGTCGCGACGACTCCTCATGGGAGACGACAGAGGACACAAAAGCCCCCTCGTGTTTGTCTAGGTTCTCCTCGGGTAACCATTGGCAATGGTCCTTCCTTGGGTTGGGTTTTCATGGCCGATTTCTTAACTGCATTGGCTATAAAAGTGATGACCAGCACCACAACTGTGGATAATTACCAGCGTGTCTATGTCCCACTAGGCATTCCTCTGAGGCCCAAAATTGAATGTGTTGAACAGGAACTGCTAAGCGGAGATACTGTTGTAATAGCTGAAACCGGAGACTCATGGTTCAACTGTCAGAAGCTCCATCTGCCTGAGAATTGCGGGTATGAATTCCAGATGCAGTATGGATCCATTGGTTGTGATGAGGACATGTTCAAGAGCAAGGGCAAGGATCCACTTGATGGACTTGGAGGACCTATGACAAGGGCTAGAGCAAGGAAAGCCAAGGAATCTCTTCAACAAGTGTTGTCCATACTATTTGAATACAAGCCCAAGTTTCAAGGAGAAAAGTCCAAGGTTGTAACAACACAAGATATTTCAACAATGATTCGTTGTGGACAAAAGATCATCATATTTCTCATCAATAATGGAGGTTATACAATTGAAGTTGAGATTCATGATGGTCCATACAATGTGATAAAGAATTGGGACTACACTCACTTTGTGGACACTATCCATAATGGGCAAGGCAAATGTTGGACTGCCAAG

Predicted protein sequences of Glyma15g35230

Limit To All Plant Sequences

>Glyma15g35230.1   sequence type=predicted peptide   gene model=Glyma15g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ELDLYSIPQSGRKAFCITAVEISLPFICGIDVAVILCKIVDGVDKAEFPQFLIFMGVSLSITAFPVLARILAKLKLFTMCVGETTMVATTPHGRRQRTQKPPRVCLGSPRVTIGNGPSLGWVFMADFLTALAIKVMTSTTTVDNYQRVYVPLGIPLRPKIECVEQELLSGDTVVIAETGDSWFNCQKLHLPENCGYEFQMQYGSIGCDEDMFKSKGKDPLDGLGGPMTRARARKAKESLQQVLSILFEYKPKFQGEKSKVVTTQDISTMIRCGQKIIIFLINNGGYTIEVEIHDGPYNVIKNWDYTHFVDTIHNGQGKCWTAK

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