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Report for Sequence Feature Glyma15g34831

Feature Type:gene_model
Chromosome:Gm15
Start:39367368
stop:39368166
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g34831
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40240AT Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr5:16082325-16084466 REVERSE LENGTH=368 SoyBaseE_val: 2.00E-27ISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00892PFAM EamA-like transporter family JGI ISS
UniRef100_B9RUD0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9RUD0_RICCO SoyBaseE_val: 7.00E-27ISS
UniRef100_I1MIH0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MIH0_SOYBN SoyBaseE_val: 8.00E-76ISS

Expression Patterns of Glyma15g34831
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g34831 not represented in the dataset
Glyma15g34831 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g34831 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g222000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g34831
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g34831
>Glyma15g34831.1   sequence type=CDS   gene model=Glyma15g34831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTATGTTGGAGTTAGCTACAGTTCTCCAACACTTGCTTCATCAATCGCCAATCTGGGCCCTGCTTTCACCTTCATTCTTGCCATTATTTTCAGGATGGAAAAGATAGCTGCCAAAAGCAGAAGTAGTCAAGCTAAGGTAATTGGAAGCATAATATCAATAGCAGGAGCATTTGTATTGACTTTGTACAAAAGCCCTTCAATCATCAAAGCTCATTCCCATGATCTTTCCTTACCACTTCAACAACCATTTAGCTTTCTTAAATCTAGGGATGCAGATTGGGTCATTGCTGGCACATGCTTGGAAAGTAGGACTGAATATTTCATTAATCTCCATTGTTTGCACTGTAAGATACCTTTCTAA
Predicted protein sequences of Glyma15g34831
>Glyma15g34831.1   sequence type=predicted peptide   gene model=Glyma15g34831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYYVGVSYSSPTLASSIANLGPAFTFILAIIFRMEKIAAKSRSSQAKVIGSIISIAGAFVLTLYKSPSIIKAHSHDLSLPLQQPFSFLKSRDADWVIAGTCLESRTEYFINLHCLHCKIPF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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