Glyma15g34636 - SoyBase

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Report for Sequence Feature Glyma15g34636

Feature Type:	gene_model
Chromosome:	Gm15
Start:	39175735
stop:	39178080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g34636

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27600	AT	Annotation by Michelle Graham. TAIR10: long-chain acyl-CoA synthetase 7 \| chr5:9742616-9746795 FORWARD LENGTH=700	SoyBase	E_val: 7.00E-164	ISS
GO:0001676	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004467	GO-mf	Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1256	KOG	Long-chain acyl-CoA synthetases (AMP-forming)	JGI		ISS
PTHR11566	Panther	DYNAMIN	JGI		ISS
PTHR11566:SF22	Panther	DYNAMIN-RELATED GTPASE	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
PF01031	PFAM	Dynamin central region	JGI		ISS
UniRef100_G7ID84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annotation was added to scaffolds in November 2011 Long chain fatty acid-CoA ligase n=1 Tax=Medicago truncatula RepID=G7ID84_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MIG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIG2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g34636

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g34636 not represented in the dataset	Glyma15g34636 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g34636 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g220900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g34636

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g34636

Limit To All Plant Sequences

>Glyma15g34636.1   sequence type=CDS   gene model=Glyma15g34636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTATATAAAGCCGGAAGAAAACATTTTACTGAATGTTTTCTCTGTTAGTGCTGATTTTACTACTTGTGAGTCCATTTGGATGTCTCAAAGTGTTGACAACACTGGGCTCAGGACTTTGGCTGTGGTGACAAATACTGCCAAGTCTCCTGAAGGCTTGTTAGAGAAAGTTACAGTTGATGAAGTCAATATTGGTCTTGGCTATGTTTGTGTCCGAAACCGCATTGATGATGAAATTTATGAGGATGCTAGGGTGGAAGAACAAAAGTTGTTCGAGTTCCATCCACTTCTTTTCAAAATTGACAAGTCTATTGTGGGTGTTTCAGTTTTAGCACAGAAACTGGTTCAGGTTCAAATACAGGCTATGAGCACATCTAAAATGTTGCCAGAAATAGTGAAAAAGATCAATGAGAAGATGGCTAATAATATGCCTGATTTGGAAAAATTGCCAACAAACTTGGCTTCAGTTGCTGATGCCATGACCGCTTTCATGCATATTATTGGATTGGCAAAAGAATATCTTAGAAAAATTCTCCTTAACGGAGAATTTGATGAGTCCCCATATGATAAAAACATGCATCGCGCTCCACGTTCGGTTGAGGTTTGTGCTGAAAGTGATGCAGAACAGGGGTATAGTGTTGTACTCCTAGAGAAATTACAAACAGGAAGGTGGAATGTTTACAGATCTATACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTAGTACCCTGCACAATAATTTTGTGTGCTCAGTTGACACCTTTCAAGACTACAAATATCGGGGAACACGTGTCCGTGTTGATGGAACTGTTCGGGAGTACAAATGGATGACATATGGAGAAGTAGGTATGCCCCGGTCAGCAATAGGTTCTGGTTTGATTTATTATGGAATCCAAAAGGGCTCTAGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTGCAAGTTATATTTTGTGTACCTCAAACATTAAAATTATTGCTGAGCTACTTGTCAGATATTCCAACTGTACATCTAATCATGGTAGTTGGAGGTATGGATGATCGAATTCCATCAGTTCCATCGTCAACTGGAGTGGTACAAATACCACCTGGAACCCCAAAAGGTGCTATCTCAACCCATGGCAACTTTATTGCAAGTGTTGCTAGGAGTACTAGAGATGAGAAATTCGACCCTTCTGATGTTTATCTATCCTGTCTCCCTTTGGAATACATTTATGTGCAAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGAATTCTACCAGGGGGATAGTATGAAATTAATGGATGACATAGCTGCTCTAAAACCTACTGTCTTTTGTAGTGTTCCTCGGCTATATAACAGAATATATGCTGGTATCATTAATGCTGTTAAAACATCTGGTGTTTTCAACAAGATAAAAAAGAAGCTTAGAGGACGAGTTCGAGTTATGGCATTAGGTGCCTCACATTTATCACCCGATTTCATGGAATTTTGGAAGATTTGCCTTGAGTCTTGTGTTATAAGTTGCATTGATGAGGATGACAACCTTGTTGGCTCTCCTAATGTAGCCTGTGATATAAAACTTGTGGATGTTCCAGAAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGGGAAATTTGTGTTAGGGGTCCCATTGATGAAGATGGATGGCTAAATACTGGAGATATTGGGACTCAAGGTTGTTTTTCCCAGCGGAGGGTGCTGATAGCAATACAGAGAGGGTTGATACCAGACCAAGCAGGAACATCAAGAGGCCCAATTATCTTTGTGATTACGTATGAGGGGACAGCACTAGGCTAA

Predicted protein sequences of Glyma15g34636

Limit To All Plant Sequences

>Glyma15g34636.1   sequence type=predicted peptide   gene model=Glyma15g34636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYIKPEENILLNVFSVSADFTTCESIWMSQSVDNTGLRTLAVVTNTAKSPEGLLEKVTVDEVNIGLGYVCVRNRIDDEIYEDARVEEQKLFEFHPLLFKIDKSIVGVSVLAQKLVQVQIQAMSTSKMLPEIVKKINEKMANNMPDLEKLPTNLASVADAMTAFMHIIGLAKEYLRKILLNGEFDESPYDKNMHRAPRSVEVCAESDAEQGYSVVLLEKLQTGRWNVYRSIRSPLQLVTKFPNHPEISTLHNNFVCSVDTFQDYKYRGTRVRVDGTVREYKWMTYGEVGMPRSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVQVIFCVPQTLKLLLSYLSDIPTVHLIMVVGGMDDRIPSVPSSTGVVQIPPGTPKGAISTHGNFIASVARSTRDEKFDPSDVYLSCLPLEYIYVQANQVMTVHFGIAVEFYQGDSMKLMDDIAALKPTVFCSVPRLYNRIYAGIINAVKTSGVFNKIKKKLRGRVRVMALGASHLSPDFMEFWKICLESCVISCIDEDDNLVGSPNVACDIKLVDVPEMNYTSDDQPNPRGEICVRGPIDEDGWLNTGDIGTQGCFSQRRVLIAIQRGLIPDQAGTSRGPIIFVITYEGTALG*

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