SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58040 | AT | Annotation by Michelle Graham. TAIR10: homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196 | SoyBase | E_val: 3.00E-118 | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF05182 | PFAM | Fip1 motif | JGI | ISS | |
| UniRef100_B9SBX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBX9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B729 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B729 related cluster n=1 Tax=unknown RepID=UPI000233B729 | SoyBase | E_val: 0 | ISS |
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Glyma15g33980 not represented in the dataset |
Glyma15g33980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g205600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g33980.2 sequence type=CDS gene model=Glyma15g33980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGACGACGACGAGTTCGGAGATTTATACACCGACGTTCTCCGCCCCTTCGCTTCTTCGCCCTCATTATCCTCTGCGCCGCAGCCCCACCAACCTTCCCCTGCGCCCCCCTCCCTCGATCTCAGTCCCAATCCGGACGATGCACAGATCCCCTGCGATGCGCCCCACGCTAATTCCCCTGCACCAACCAATCCCCTCCCTGAGCCAGACCCACGCGAAGCGCCCACGGAGCCGCCTAAAATTCCGGACGCCAAGCCTACGACGGATTCAAACCTCGCCGCCGCCGCCGTTGCCGTTGATCCGATGGACAGGGAGGTGAAATTCGACATCGAGGAGGACGAAGAAGACGGCGGAGAGCCGGTTATTCCGGGGCTTACAGGCGAGTTGGCAGCGCCGACTGAGGGCGAGGGCGATGATTGGGACAGCGATAGTGAGGATGATTTGAAGATAGTGTTGAATGAGAACAACCACATGGCCATGGAAAGAGGAGGGATGGCGGATGGTGATGAGGAGGAGGAGGATGGGGATGAGGAGCTTGTGATTGTGGCTGGCGGCGATCCGAATCAGGGCGCGGAGGAGCCGGAGTGGGGCGAGAATGCCACCCTGGCCGCTGGAGACGGCGAGAGGAAGGATGCCGCCGGGGAGTTGGCCAAGGCCGGCGGTGCGGCTGTGCCCCCGAAGATTGGGTATAGCAATCAAGGATATCACCCCTTTCATTCGCCTTTTAAGTATCAGTATGTTAGGCCTGGTGCAGCACTAATGCCTGGAGCTGCTGCTTCTGCTCCAGGAGGGCCTCCTGGTCAGATTCGTCCTCTTGCTAACATGGCTGGTCGAGGCAGAGGGGACTGGAGACCGCCTGGAATAAAAGGTGGTGCTGCTATGCAAAAAGGTTTTCATGCAGGTCCCGGATTACCTGGTTGGGGCAACGGTGCAGCAGGGCGGGGTTTTGGTGGTGGATTGGAATTCACACTTCCTTCTCACAAGACTATATTTGATGTAGATATTGAGAATTTTGAGGAGAAACCGTGGCAATATCCAAATATTGATACATCAGATTTTTTCAACTTTGGCCTGAATGAGGAGAGCTGGAAAGATTATTGCAAACAGCTGGAGCAACTACGCTTGGAGTCTACAATGCAAAGCAAGATCCGTGTTTATGAGAGTGGTCGAACAGAGCAGGAGTATGATCCAGACTTACCCCCTGAATTAGCTGCAGCTACTGGTATACATGATAGTCCCGTGGAAAACACAAATTCTCTAAAGTCAGATGTCGGACAAAGCGATGTTATGAAAGGTTCTGGGACTGGACGTGTGCGACCACCACTACCAACTGGTAGAGCAATACAGGTGGAAGGTGGTTATGGTGACCGGCTTCCCTCCATTGATACCCGCCCTCCCCGAATCCGCGATTCCGATGCTATCATTGAGATTGTTTTACAGGATACAGAAGATGACCAGTCCTCTGCAGGAGTTGCTCAAGATCCGCCAGAGGGTGGAGAACCCCATAGAGAGGATTTTAGAGAAGACCATGTAGCTGGAGATGAAATTCCAAGGTTGGAACCCGAGTATTTTGATGGTTTTCCACAGGTTTATAATGGTCGGAAGAAAGAGATTGCAGGAAGAAGAATGTCATTTATAAATTCCAGTGCTGCTAACATGCCTAATGGGGATGAAAAATTGTTCTTCCCACAGGAAGAGCCGATTGAGTACTCTGGTTCAAAGGGCCAAAATCGTAGGTCCTATGGTGGCAATTGTAGCTCCTCTCATGACGAAAGGCAGATGCAAAGAAGAGTGGGTGGTCAGTCTCCTTCAATTACTCCCATTCAAGAATTGGCAACTGATAACAGTCTAAAAGAAGAGTCAGCAGAAAGCATGGAAGGTAGACATAGATCATCCCCTGCTGTTAAGGATATAAGGGAGTCCAGTGTGGAGGAGAAGGATATTGAACTTGAGGATACTGGGACAGCTGATGGAAGTTCCAGATTGGAAAAGGAGGAAACAGTAGACAAAGTAGATGCCCTTGAGGATGGGGTAGCAAAGAGACAGAAGTTGACATCTCGAGTTGAGCCACCTTTGCTTGATGAAGTTGATGATTGGGAGGACTCAAAAGCTGCAAAAAGTAGTGATAACAGCAAAGCAAGATCAGCCAGCAGTAGGGATAACCAAAAGCGGCGAGAGGGTTTTGAAGAGGAAGTAGTTCAAGATCCACGATCAGCACAACTGAGTAGCATCAGACAGCACCCGGATGAAATTGAGCAGGGATTTTATAGAAGAGAGCATGATGCAAAGCAAGAACCCGGAAGAAATCTCATGATGCTTAAAGGCAGAGAGAGACCATACCCTTACAAGGACCGGCATCCTAGCTCAGCTACTCAGTTGAACACAAATGCTGATGGATTTGATGGACAAAAAGAAAGGGACAATTCTGAAATGGATTGGTCACGAAGAGATGATGATCTCTATAACAGAAGGGTTAGAAATGATGAACCTAGAAAGAGGGATAGGGCTAAGGTTCGAGAAAATGAGAAAAACGACAAAGAAGATAGCCTTCATTCAAGAAAACAGTTGGATAATGGTAGCTACAGGGTTTCCTATGAAAAGGATGTTGGGTCTAGAGACTCAAGACAAAGGGAAAGAGATGAGGGCTTGAGGATTAGGTACGAAGCAGTAGAGGATTACCGTGGCAAGAAGAGGAAGGATGAGGAATATCTTAGGAGGGAGCATATTGACAAAGAAGAAGTTCTGCATGGCTACAGGGAAATTGCTAGTAGTCGGCGCAGACGAGAAAGAGATGAAGTATTGGATCCACGAAAGAGGGATGACCTGCAAAGAGCTAGAGATAACCCTGATGATCAATATGCTACTAGGCAGAAAGATGAGGCCTGGGTACTGAAGGAGAGGGGTGATAGGCAGAGAGATAGGGAAGAGTGGTGCCGGATGAAACAGTCCCATGAAGAACACCTACCCAAGCGTGAAAGAGAAGGACGGAGTTCTGTAAGAAGTGGACGAGGGGCTGAACATAAACTTTCTGAGAAAGAATACCAATCCCGAGAAGCAATGCGACACAATGACCAATTGAAGAGAAGGGATCGAATTCAGGATGAAAGTCCACATCATAAGGGGCGAGATGATGCTTCTGCCCGTGGAAATCAATATACTACTGAGGAAAGGCGATCTAGGCTAGAAAGGTCAAGTAGTCGTAGTGATCGTGTTGCTAATGTTTCTGATAACCAAAAAGTCAAGCATAGAGAAGGCTCAAGGAAAAGCAAAGAACGTGATGTTAGTGACCTTAATAGTTTAGGCCTGTCCAAGAGAAGTCAAGAAAATCAAAGTGGTCCAACCAATGAGAAGGGCTTGAAAGGATCTGGTGATGAAGAGCGTGCTGAGCATGAAATTTCAGGGCATCGCCTGTCAAGAAAACAGCGGGAAGACATGTCTTCAGATGATGAACAGCAAGATTCTCGCAGAGGACGTTCTAAATTGGAACGCTGGACCAGCCATAAGGAAAGAGATTTCAATGTCAACAAGTCCTCTTCTTCCTTGAAGTTCAAAGACATTGATAAGGATAATAATGATGCTTCTTCTGAAGCTGGGAAGCCTGCGTATGAACCTGCTAAAACTGTTGATGCTGATAACCAACATATCTTGTCAGTTGAAGCAAGGGATTCTGCAGATATGGAAAATAGGGATGCTGATACAAAAGAATCAGGGGATCGGCACCTTGACACAGTTGAGAGGTTGAAGAAGCGAAGTGAGCGGTTCAAGCTCCCAATGCCTAGTGAAAAAGAGGCCCTCGTCATCAAGAAGTTAGAAAGTGAACCTCTGCCTTCTGCCAAAAGTGAAAATCCAGTAGTAGATTCAGAAGTCAAACAAGAACGACCTGCCCGGAAAAGAAGATGGGTTACTAACTGA
>Glyma15g33980.2 sequence type=predicted peptide gene model=Glyma15g33980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDDDEFGDLYTDVLRPFASSPSLSSAPQPHQPSPAPPSLDLSPNPDDAQIPCDAPHANSPAPTNPLPEPDPREAPTEPPKIPDAKPTTDSNLAAAAVAVDPMDREVKFDIEEDEEDGGEPVIPGLTGELAAPTEGEGDDWDSDSEDDLKIVLNENNHMAMERGGMADGDEEEEDGDEELVIVAGGDPNQGAEEPEWGENATLAAGDGERKDAAGELAKAGGAAVPPKIGYSNQGYHPFHSPFKYQYVRPGAALMPGAAASAPGGPPGQIRPLANMAGRGRGDWRPPGIKGGAAMQKGFHAGPGLPGWGNGAAGRGFGGGLEFTLPSHKTIFDVDIENFEEKPWQYPNIDTSDFFNFGLNEESWKDYCKQLEQLRLESTMQSKIRVYESGRTEQEYDPDLPPELAAATGIHDSPVENTNSLKSDVGQSDVMKGSGTGRVRPPLPTGRAIQVEGGYGDRLPSIDTRPPRIRDSDAIIEIVLQDTEDDQSSAGVAQDPPEGGEPHREDFREDHVAGDEIPRLEPEYFDGFPQVYNGRKKEIAGRRMSFINSSAANMPNGDEKLFFPQEEPIEYSGSKGQNRRSYGGNCSSSHDERQMQRRVGGQSPSITPIQELATDNSLKEESAESMEGRHRSSPAVKDIRESSVEEKDIELEDTGTADGSSRLEKEETVDKVDALEDGVAKRQKLTSRVEPPLLDEVDDWEDSKAAKSSDNSKARSASSRDNQKRREGFEEEVVQDPRSAQLSSIRQHPDEIEQGFYRREHDAKQEPGRNLMMLKGRERPYPYKDRHPSSATQLNTNADGFDGQKERDNSEMDWSRRDDDLYNRRVRNDEPRKRDRAKVRENEKNDKEDSLHSRKQLDNGSYRVSYEKDVGSRDSRQRERDEGLRIRYEAVEDYRGKKRKDEEYLRREHIDKEEVLHGYREIASSRRRRERDEVLDPRKRDDLQRARDNPDDQYATRQKDEAWVLKERGDRQRDREEWCRMKQSHEEHLPKREREGRSSVRSGRGAEHKLSEKEYQSREAMRHNDQLKRRDRIQDESPHHKGRDDASARGNQYTTEERRSRLERSSSRSDRVANVSDNQKVKHREGSRKSKERDVSDLNSLGLSKRSQENQSGPTNEKGLKGSGDEERAEHEISGHRLSRKQREDMSSDDEQQDSRRGRSKLERWTSHKERDFNVNKSSSSLKFKDIDKDNNDASSEAGKPAYEPAKTVDADNQHILSVEARDSADMENRDADTKESGDRHLDTVERLKKRSERFKLPMPSEKEALVIKKLESEPLPSAKSENPVVDSEVKQERPARKRRWVTN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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