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Report for Sequence Feature Glyma15g33701

Feature Type:gene_model
Chromosome:Gm15
Start:37579645
stop:37581325
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46180AT Annotation by Michelle Graham. TAIR10: ornithine-delta-aminotransferase | chr5:18718766-18721271 REVERSE LENGTH=475 SoyBaseE_val: 1.00E-26ISS
GO:0006561GO-bp Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process SoyBaseN/AISS
GO:0006593GO-bp Annotation by Michelle Graham. GO Biological Process: ornithine catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0010260GO-bp Annotation by Michelle Graham. GO Biological Process: organ senescence SoyBaseN/AISS
GO:0019544GO-bp Annotation by Michelle Graham. GO Biological Process: arginine catabolic process to glutamate SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004587GO-mf Annotation by Michelle Graham. GO Molecular Function: ornithine-oxo-acid transaminase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR11986Panther AMINOTRANSFERASE CLASS III JGI ISS
PTHR11986:SF18Panther AMINOTRANSFERASE JGI ISS
PF00202PFAM Aminotransferase class-III JGI ISS
UniRef100_I1K3G2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3G2_SOYBN SoyBaseE_val: 7.00E-30ISS
UniRef100_Q38IW9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ornithine aminotransferase n=1 Tax=Glycine max RepID=Q38IW9_SOYBN SoyBaseE_val: 9.00E-30ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g33701 not represented in the dataset

Glyma15g33701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g33701.1   sequence type=CDS   gene model=Glyma15g33701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTACTAGGGAAAGCATCGGGTGGAGGAGTTATACCAGTTAGTGCAGTTCTTGCAGACAAAGATGTGATGCTTTGTATACAACCGGGACAGCATGGAAGTACCTTCGGTGGAAATCCACTGGCCAGTGCAGTTGCAATTGCCTCACTAGAAGTGATAAAAAATGAGAGACTCGTTGAGAGGTATCAAATGCATTGA

>Glyma15g33701.1   sequence type=predicted peptide   gene model=Glyma15g33701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FLLGKASGGGVIPVSAVLADKDVMLCIQPGQHGSTFGGNPLASAVAIASLEVIKNERLVERYQMH*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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