SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32490 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034 | SoyBase | E_val: 0 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035194 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004004 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0923 | KOG | mRNA splicing factor ATP-dependent RNA helicase | JGI | ISS | |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF04408 | PFAM | Helicase associated domain (HA2) | JGI | ISS | |
| PF07717 | PFAM | Domain of unknown function (DUF1605) | JGI | ISS | |
| UniRef100_I1MIE3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIE3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LQK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F5D14.27 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LQK8_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma15g33186 not represented in the dataset |
Glyma15g33186 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g33186.1 sequence type=CDS gene model=Glyma15g33186 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGACTGAACAAAAATTAACACGGAAGGAGGAAGGAACACCAAGATACGTAAAAAGGAACGACAACAAGCTACAATTGAGGTATCCATCTGCCTCATTCCTCCACTCATCCGACACCCCAAAAGCACCCAAACCGCTCTTAGCAAAATTGATTTTGAGGCCCGATACAAGTTCAAAAGCCCTCATCATTGCTTTGATAGCTCTAACATTTTCCATTGATGCCTCCCCGAAGAAGATTGTGTCATCCGCATACTGTAACAGGCTAATTTCCAACGATGATATAGAAGATGAGCAATATCTATTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGCGAACTGAGGTACAAGAAAGAGATATATGAACTTGTGAAAAAGCGGTCAGAGGAGGCTGACAATGCGAATGGGTATAGAATGCCAGAAGCTTATGATCACGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAGCATTACAGGGATCTAAATGCTGAGGATAAGATGAATCCATTTGTTGAACAAGAGGCTTGGGAAGAACATCAAATTGGAAAGGCAACACTGAAGTTTGGTTCAAAAAATAAAAAACAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGATTTTATCAAGGCATCAGTAATGGAGGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCACATGAAAAATCCAAAGCGAAGTCAGCTTTCGAGGCACTTCAGGAGGAGAGGAAAAGGTTACTTATGTTCCCTTATCGGGATGAATTGCTCGAAGCTGTTCATAATCACCAGGCATGGGAATGGGAAGAATCAAAAGAATTCTCAGACTGTGTCGTTTTGAATTCTTTGACAAGGGAGAAGGGAGACACAAAAGAATTCAGGCGGTTAGTCCTTTGTTCTTTTGGAAAAGGGGGAAGAGAGACACCAAAAGAATTCAGGCGGTTAGTCCTTGGCGAATTCTTTTTGGCAAAGGGAGAAGATAATGAAAAGATAAATAGCACAAGTTTTCAAGGTTTAGAAAACCAGAAAACTTCAGAAAGCTTTTGGTACAAAGAAGAAGAAGAAGTTTCAAAGAGATTCAAGGCTTGTAAAGGATTGTATGGAAAAGCAAAAATTGCATGTACTCAGCCACGACGTGTTGCGGCTATGAGTGTTGCTGCTCAAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAGACTATTCTGAAATACATGACAAATGGAATGTTACTGAGAGTAAAATGTGACAGTGGAATATATATTCAGGGATTAAAATGGTTGCTTACTCTGTTTTTGTTACGGGATATTGCTCATTTCCGGCCTGATCTCAAGCTGCTGATATCAAGTGCTACACTTGATGTAGAGAAATTCAGTGATTACTTTGATTCTGTGCCAATATTCAGAATTCCAGGGAGACGATATCCTGTTGAAATAAGCTATACCAAAGCTCCAGAAGCTGACTACTTAGATGCAGCTATTGTCACATCCCTTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGAAGAAATTGAAACGGCAGAAGAAATCTTGAAACATCGAACTAGAGGCTTGGGGACTAAAATTTCTGAGTTAATAATATGCCCTATATATGCCAACCTTCCAACTGAACTACAAGCTAAAATATTTGAACCCACTCCCGAAGGGGCACGAAAGGTTGTCCTAGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTTATTGATCCAGGATTCTGTAGGATGAAAACTTCAGCAAATCAAAGAGCTGGTCGTTCTGGAAGAACGGGTCCTGGTAAGTGCTTCCGACTGTATACTGCATACAATTATCACAATGATTTGGATGATAACACTGTACCAGAAATACAGAGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTATTGAACTTTGATTTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCGTTAAATAAGCTTGGTGAATTAACTAAGGTGGGTAGACAGATGGCAGAGTTCCCACTTGATCCAATGTTGTCAAAAATGATAGTGGCTTCAGAAAATTACAAGTGTTCAGATGATATCATTTCTATTGCTGCTATGCTTTCAGTTGGAAACTCAATATTTTACCGTCCAAAAGATAAACAAGTACATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTGGGAGACCATATGGCGCTGCTAAAGGTGTACAATTCATGGAAGGAGATCAATTATTCAACGCAATGGTGTTATGAGAATTATATACAGGTAAGTAGTATGAAACGGGCTAGGGATATTCATGATCAACTGGCAGGGTTTTTCCCACACTCTGCACGGCTGCAAAAGAATGGATCATATCGAACTGTTAAACATTCACAGACTGTTCACATACATCCTAGTTCGGGGCTCGCACAGGTTCTTCCCAGATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAGTATATGAGACAGATGTCGTTGTATGTCGACAACAACAACATCGGTCATCCTAGGACCCGTCTTTGTAATGCAAGAATACAACGTCAGTGGCTATAA
>Glyma15g33186.1 sequence type=predicted peptide gene model=Glyma15g33186 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LTEQKLTRKEEGTPRYVKRNDNKLQLRYPSASFLHSSDTPKAPKPLLAKLILRPDTSSKALIIALIALTFSIDASPKKIVSSAYCNRLISNDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRSEEADNANGYRMPEAYDHEGGVNQEKRFSVAMQHYRDLNAEDKMNPFVEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKFDYEEMEDSHEKSKAKSAFEALQEERKRLLMFPYRDELLEAVHNHQAWEWEESKEFSDCVVLNSLTREKGDTKEFRRLVLCSFGKGGRETPKEFRRLVLGEFFLAKGEDNEKINSTSFQGLENQKTSESFWYKEEEEVSKRFKACKGLYGKAKIACTQPRRVAAMSVAAQVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTNGMLLRVKCDSGIYIQGLKWLLTLFLLRDIAHFRPDLKLLISSATLDVEKFSDYFDSVPIFRIPGRRYPVEISYTKAPEADYLDAAIVTSLSNPCHSTSWRYIEEIETAEEILKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCRMKTSANQRAGRSGRTGPGKCFRLYTAYNYHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRQMAEFPLDPMLSKMIVASENYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKEINYSTQWCYENYIQVSSMKRARDIHDQLAGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQMSLYVDNNNIGHPRTRLCNARIQRQWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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