SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30960 | AT | Annotation by Michelle Graham. TAIR10: SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
| GO:0010540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport | SoyBase | N/A | ISS |
| GO:0019722 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24345 | Panther | SERINE/THREONINE-PROTEIN KINASE PLK | JGI | ISS | |
| PTHR24345:SF45 | Panther | SERINE/THREONINE-PROTEIN KINASE PLK1 | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF03822 | PFAM | NAF domain | JGI | ISS | |
| UniRef100_Q8LK24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SOS2-like protein kinase n=1 Tax=Glycine max RepID=Q8LK24_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8LK24 | UniRef | Annotation by Michelle Graham. Best UniRef hit: SOS2-like protein kinase n=1 Tax=Glycine max RepID=Q8LK24_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g32800 not represented in the dataset |
Glyma15g32800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g203700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g32800.1 sequence type=CDS gene model=Glyma15g32800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGAAGAGCAACGTTGGCGGCGACGCGATTAACACGACACTGCTTCACGGGAAGTACGAGCTGGGCCGGCTGTTAGGCCACGGAACCTTCGCGAAGGTGTACCACGCGCGCCACCTGAAGACGGGAAAGAGCGTGGCGATGAAGGTGGTGGGCAAAGAGAAGGTGGTGAAGGTAGGCATGATGGAGCAGATCAAGAGAGAGATCTCAGCCATGAACATGGTGAAGCACCCAAACATCGTGCAGCTTCACGAGGTCATGGCGAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTCCGCGGCGGCGAGCTCTTCAACAAGATCGCCAGAGGCCGTCTCCGGGAGGAGATGGCCAGACTTTACTTCCAACAACTCATCTCTGCTGTGGACTTCTGCCACAGCCGCGGCGTCTACCACCGTGACCTCAAGCCAGAGAACCTTCTCCTCGACGACGACGGCAACCTCAAGGTCACCGACTTCGGCCTCAGCACTTTCTCCGAGCACCTCCGGCACGACGGCCTGCTGCACACTACGTGCGGCACGCCGGCCTATGTCGCGCCCGAGGTGATTGGGAAAAGAGGCTACGACGGCGCCAAGGCCGATATTTGGTCTTGTGGCGTAATCCTCTACGTACTTCTTGCTGGTTTTTTACCCTTCCAGGATGACAACCTGGTGGCCTTGTACAAGAAAATTTACCGCGGTGACTTCAAGTGTCCGCCGTGGTTCTCCTCCGAGGCGCGGAGGCTCATCACCAAGCTCCTCGACCCCAACCCGAACACGCGAATCACAATTTCAAAAATCATGGACTCGTCGTGGTTCAAGAAACCCGTGCCGAAGAACTTGATGGGAAAGAAAAGAGAGGAATTGGATCTGGAGGAGAAGATTAAACAGCATGAGCAGGAGGTTTCTACTACGATGAATGCTTTTCACATCATTTCGCTCTCGGAGGGGTTCGATTTGTCGCCGTTGTTCGAGGAAAAGAAGAGAGAAGAGAAAGAGTTACGGTTTGCGACCACGCGCCCCGCGAGCAGCGTGATTTCGAGATTGGAAGATTTGGCGAAGGCGGTGAAGTTCGACGTGAAGAAGAGCGAGACTAAGGTGAGGTTGCAGGGTCAAGAAAAAGGGCGAAAAGGTAAACTCGCTATTGCTGCGGACTTGTACGCCGTGACGCCGTCGTTTTTGGTGGTGGAGGTTAAGAAGGACAACGGTGACACCTTGGAGTATAACCAGTTCTGTAGCAAGGAGCTTCGTCCAGCTCTTAAAGATATCGTGTGGAGGACTTCTCCTGCAGAGAATCCTACACTCGCTTGA
>Glyma15g32800.1 sequence type=predicted peptide gene model=Glyma15g32800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEKSNVGGDAINTTLLHGKYELGRLLGHGTFAKVYHARHLKTGKSVAMKVVGKEKVVKVGMMEQIKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREEMARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSTFSEHLRHDGLLHTTCGTPAYVAPEVIGKRGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVALYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNTRITISKIMDSSWFKKPVPKNLMGKKREELDLEEKIKQHEQEVSTTMNAFHIISLSEGFDLSPLFEEKKREEKELRFATTRPASSVISRLEDLAKAVKFDVKKSETKVRLQGQEKGRKGKLAIAADLYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPAENPTLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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