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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g32285

Feature Type:gene_model
Chromosome:Gm15
Start:35657933
stop:35663403
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g32285
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65970AT Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein | chr5:26387509-26390407 REVERSE LENGTH=569 SoyBaseE_val: 2.00E-40ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF03094PFAM Mlo family JGI ISS
UniRef100_I1J8B2UniRef Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1J8B2_SOYBN SoyBaseE_val: 1.00E-80ISS
UniRef100_UPI000233B5E0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B5E0 related cluster n=1 Tax=unknown RepID=UPI000233B5E0 SoyBaseE_val: 6.00E-91ISS

Expression Patterns of Glyma15g32285
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g32285 not represented in the dataset
Glyma15g32285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g32285 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g219500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g32285
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g32285
>Glyma15g32285.1   sequence type=CDS   gene model=Glyma15g32285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGCTCAATGTTCAGAAAGCTGTTTTGTTCTGTGTTGTTTTCATGGCTCTGTTTCGGAGGTTTGGCCATGGCAGCAGGTGAAAGTAGCAGCAGCTCCAGAGACCTCGACCAGACACCAACGTGGGCCGTTGCTGCTGTCTGTACTGTTTTCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTTGGACATGGCTTGGACAAAATAAAAAGAAGGCTTTGCTCGAAGCTCTGGAGAAGGTCAAGGCTGAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGATCAGAGTTACATAGTCAGAATATGTATTCCCGAAAAGCTCGCAGACAATATGTTACCATGTCCGTATAGATACAAGGAGGCCAAAAAGGCATCCGTAGTGAAGAGGAACATCGTAGGAAACTTTTGTCTTATGAACGTAGATATTTAG
Predicted protein sequences of Glyma15g32285
>Glyma15g32285.1   sequence type=predicted peptide   gene model=Glyma15g32285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSSMFRKLFCSVLFSWLCFGGLAMAAGESSSSSRDLDQTPTWAVAAVCTVFILVSIALEKSLHKVWTWLGQNKKKALLEALEKVKAELMILGFISLLLTFDQSYIVRICIPEKLADNMLPCPYRYKEAKKASVVKRNIVGNFCLMNVDI*






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