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Report for Sequence Feature Glyma15g32270

Feature Type:gene_model
Chromosome:Gm15
Start:35639756
stop:35640873
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g32270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08170AT Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=243 SoyBaseE_val: 5.00E-32ISS
GO:0006334GO-bp Annotation by Michelle Graham. GO Biological Process: nucleosome assembly SoyBaseN/AISS
GO:0000786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR23428Panther HISTONE H2B JGI ISS
PTHR23428:SF2Panther CAMP RESPONSE ELEMENT-BINDING PROTEIN JGI ISS
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI ISS
UniRef100_I1MID2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MID2_SOYBN SoyBaseE_val: 3.00E-67ISS
UniRef100_Q9SGE3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone H2B.2 n=1 Tax=Arabidopsis thaliana RepID=H2B2_ARATH SoyBaseE_val: 3.00E-29ISS

Expression Patterns of Glyma15g32270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g32270 not represented in the dataset
Glyma15g32270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g32270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g32270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g32270
>Glyma15g32270.1   sequence type=CDS   gene model=Glyma15g32270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAATCATTAATAGTAAATATAGGTATAATTCATGGGAGGTATGTGTATAGGCTATTGAAGAAAGTGCACCATAAAAGGGGAATTTCTTCCAAGTGCATGACTGTTCTAAACAACTTGATGTATGACATGTTTGACAGGCTGGCTTTTGAGGCTTCTAAGCTGAACAACTACATTGGACACATGACATTGTCTTTAAGGGAGATTCAAGGAGCAGTGAGGTTGGTTTTGCCAGGAGAACTTGGAAAGCATGCAATTGTTGAAGGGGTCAAAGTTGTTAACAACTACACATCCTATGATGCTTGA
Predicted protein sequences of Glyma15g32270
>Glyma15g32270.1   sequence type=predicted peptide   gene model=Glyma15g32270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSLIVNIGIIHGRYVYRLLKKVHHKRGISSKCMTVLNNLMYDMFDRLAFEASKLNNYIGHMTLSLREIQGAVRLVLPGELGKHAIVEGVKVVNNYTSYDA*






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