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Report for Sequence Feature Glyma15g31958

Feature Type:gene_model
Chromosome:Gm15
Start:35437300
stop:35450594
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g31958
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79380AT Annotation by Michelle Graham. TAIR10: Ca(2)-dependent phospholipid-binding protein (Copine) family | chr1:29860812-29863023 FORWARD LENGTH=401 SoyBaseE_val: 0ISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009690GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG4172 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR10857Panther COPINE JGI ISS
PF07002PFAM Copine JGI ISS
UniRef100_G7KJ99UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7KJ99_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MIC7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIC7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g31958
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g31958 not represented in the dataset
Glyma15g31958 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g31958 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g219300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g31958
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g31958
>Glyma15g31958.2   sequence type=transcript   gene model=Glyma15g31958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAATGAGAAATTTAGTTTACCGAAATCACCTTCTATTACCGGTCATTCATTACTCATTGGTGGGTCTCCACCGTCAACTCTTCAATATTTATCCAACTATGTCTATACCACATTATCTCCTTGCCATTACCATAAAGTCTACTCTTCAATACATCATAATTGTGTTAGCCAAGAAATGAAGAAATCAAAGCAAAACGTTGTTGAAGGGAGAGTTCCCTCTCCGAAAAACAAAACCTTGTCGCCGTCACCGTCGCTAGAACCACCACTACCACGAGAACCACCACCAGCAGCAGCTATGTCTTTGAATAAGGGTTCGGGGAAACTGTCTGCCAAAGAGAAATATGCTCTGATTCCCGATAACTTCACCACCCTAGAACAGGTTACAATTGCCTTGAGGAAGGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAGAAGCCTGCATGCTATTGGAAGTACACCTAACCCCTATGAGAAAGCCATCTCTATTATTGGCAAGACTCTGGCTCCTTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATAATTCACCTTGCCATGGTTTTGAGGAAGTTTTAGCTTGCTATCAAAAAATTGTTCCAAACTTGAGACTGTCAGGACCAACATCTTATGCTCCAGTGATTGAGGCCGCAATAGATATAGTTGAGAAAAGCCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTAACAACAAGTGCTGCGTCTGAGGATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAGAAGTTTGATGACAAGATACCAGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGGCTAAGAAATCAAGCCCCTCAGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCCTTCCAATATAAAGCAGCCACTGAACTTGGACTACTTGGTCGTGCAACAGGAAGATCAAATAAAATAGTTCCAAGACCTCCTCCAGCACCATATTCCCAGCTTGTGCCACCAGCTCGTGTTCTGAGCAATACGCCAACTTTCATGGATGATGAAAGAAATCAAATGGCATGTGCTATTTGTCTAACAAATAAAAAAGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGACTGTGGATCTAGGTTAACCGATTGTCCGATATGTCGTCAGAGGATCACCAATCGTCTCAGGGTGTTTTCTAGCTGATTGAAGAATGGAAAAATGTATAATGTATAATTTGACTAAGGTTATGTTTAGATGAATTTCTCCTAAAACTGTTTGTTTAGATAATATTTTTCATAAGTATTTATAGGAGAAGAAAATAAGAAAGTAAAATAAATTGAGTTTCTCCCATGAGTTAAAATCAACATTTCACTTCAACTTTTGGAAAAGTTCGATGGAAGAACTTGTATATAAGTTAAAGTGCATAAATTATTTTTAACTTATGAAAGAAACTTAATTTGGTTTACATTTAATTTTTTTTTTTGTAAGACCTTATGGAATATTTATCTGAACAGGGCTAAGAAGATAAGTGTCTTCTATACATTTGTTGTTGTGGCTTTCAAGAGTGCCCAAGAACAACCGTGTTATTGCATAGAAAAGGTGGCTTCGCAATGTAGGGATGATTTAGGAGTCGAGAAAATTGTGCATGTATTTGTTAGTAGTTGTTCAATTAGGCCATGTCCCATGTGTCTGAATTTGAATAATTGTATTTTAACTAATGCACATTGTACATATTATTTATATGTACCTATGTTAAAACTTTATGTATGGTTAGAGATTGTGCAAAATATCCATTGGAATCCCGTACTTGCTATTATATTCTACAAGTTAAGGACTAAGAGAATTCTATGATTTTGAGCATGTTAAATCAAAGAGATTGAAGATTTGAATATTAGTCTTAGGATCTTTTGGTTTTAATAATTTGATA
Coding sequences of Glyma15g31958
>Glyma15g31958.1   sequence type=CDS   gene model=Glyma15g31958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAATGAGAAATTTAGTTTACCGAAATCACCTTCTATTACCGGTCATTCATTACTCATTGGTGGGTCTCCACCGTCAACTCTTCAATATTTATCCAACTATGTCTATACCACATTATCTCCTTGCCATTACCATAAAGTCTACTCTTCAATACATCATAATTGTGTTAGCCAAGAAATGAAGAAATCAAAGCAAAACGTTGTTGAAGGGAGAGTTCCCTCTCCGAAAAACAAAACCTTGTCGCCGTCACCGTCGCTAGAACCACCACTACCACGAGAACCACCACCAGCAGCAGCTATGTCTTTGAATAAGGGTTCGGGGAAACTGTCTGCCAAAGAGAAATATGCTCTGATTCCCGATAACTTCACCACCCTAGAACAGGTTACAATTGCCTTGAGGAAGGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAGAAGCCTGCATGCTATTGGAAGTACACCTAACCCCTATGAGAAAGCCATCTCTATTATTGGCAAGACTCTGGCTCCTTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATAATTCACCTTGCCATGGTTTTGAGGAAGTTTTAGCTTGCTATCAAAAAATTGTTCCAAACTTGAGACTGTCAGGACCAACATCTTATGCTCCAGTGATTGAGGCCGCAATAGATATAGTTGAGAAAAGCCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTAACAACAAGTGCTGCGTCTGAGGATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAGAAGTTTGATGACAAGATACCAGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGGCTAAGAAATCAAGCCCCTCAGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCCTTCCAATATAAAGCAGCCACTGAACTTGGACTACTTGGTCGTGCAACAGGAAGATCAAATAAAATAGTTCCAAGACCTCCTCCAGCACCATATTCCCAGCTTGTGCCACCAGCTCGTGTTCTGAGCAATACGCCAACTTTCATGGATGATGAAAGAAATCAAATGGCATGTGCTATTTGTCTAACAAATAAAAAAGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGACTGTGGATCTAGGTTAACCGATTGTCCGATATGTCGTCAGAGGATCACCAATCGTCTCAGGGTGTTTTCTAGCTGA

>Glyma15g31958.2   sequence type=CDS   gene model=Glyma15g31958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAATGAGAAATTTAGTTTACCGAAATCACCTTCTATTACCGGTCATTCATTACTCATTGGTGGGTCTCCACCGTCAACTCTTCAATATTTATCCAACTATGTCTATACCACATTATCTCCTTGCCATTACCATAAAGTCTACTCTTCAATACATCATAATTGTGTTAGCCAAGAAATGAAGAAATCAAAGCAAAACGTTGTTGAAGGGAGAGTTCCCTCTCCGAAAAACAAAACCTTGTCGCCGTCACCGTCGCTAGAACCACCACTACCACGAGAACCACCACCAGCAGCAGCTATGTCTTTGAATAAGGGTTCGGGGAAACTGTCTGCCAAAGAGAAATATGCTCTGATTCCCGATAACTTCACCACCCTAGAACAGGTTACAATTGCCTTGAGGAAGGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAGAAGCCTGCATGCTATTGGAAGTACACCTAACCCCTATGAGAAAGCCATCTCTATTATTGGCAAGACTCTGGCTCCTTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATAATTCACCTTGCCATGGTTTTGAGGAAGTTTTAGCTTGCTATCAAAAAATTGTTCCAAACTTGAGACTGTCAGGACCAACATCTTATGCTCCAGTGATTGAGGCCGCAATAGATATAGTTGAGAAAAGCCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTAACAACAAGTGCTGCGTCTGAGGATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAGAAGTTTGATGACAAGATACCAGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGGCTAAGAAATCAAGCCCCTCAGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCCTTCCAATATAAAGCAGCCACTGAACTTGGACTACTTGGTCGTGCAACAGGAAGATCAAATAAAATAGTTCCAAGACCTCCTCCAGCACCATATTCCCAGCTTGTGCCACCAGCTCGTGTTCTGAGCAATACGCCAACTTTCATGGATGATGAAAGAAATCAAATGGCATGTGCTATTTGTCTAACAAATAAAAAAGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGACTGTGGATCTAGGTTAACCGATTGTCCGATATGTCGTCAGAGGATCACCAATCGTCTCAGGGTGTTTTCTAGCTGA
Predicted protein sequences of Glyma15g31958
>Glyma15g31958.1   sequence type=predicted peptide   gene model=Glyma15g31958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNEKFSLPKSPSITGHSLLIGGSPPSTLQYLSNYVYTTLSPCHYHKVYSSIHHNCVSQEMKKSKQNVVEGRVPSPKNKTLSPSPSLEPPLPREPPPAAAMSLNKGSGKLSAKEKYALIPDNFTTLEQVTIALRKEGLESSNLVLGIDFTKSNEWTGSVSFNNRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDNSPCHGFEEVLACYQKIVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTSAASEDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTDIMAKKSSPSEKEAAFALAALMEIPFQYKAATELGLLGRATGRSNKIVPRPPPAPYSQLVPPARVLSNTPTFMDDERNQMACAICLTNKKDLAFGCGHMTCRDCGSRLTDCPICRQRITNRLRVFSS*

>Glyma15g31958.2   sequence type=predicted peptide   gene model=Glyma15g31958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNEKFSLPKSPSITGHSLLIGGSPPSTLQYLSNYVYTTLSPCHYHKVYSSIHHNCVSQEMKKSKQNVVEGRVPSPKNKTLSPSPSLEPPLPREPPPAAAMSLNKGSGKLSAKEKYALIPDNFTTLEQVTIALRKEGLESSNLVLGIDFTKSNEWTGSVSFNNRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDNSPCHGFEEVLACYQKIVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTSAASEDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTDIMAKKSSPSEKEAAFALAALMEIPFQYKAATELGLLGRATGRSNKIVPRPPPAPYSQLVPPARVLSNTPTFMDDERNQMACAICLTNKKDLAFGCGHMTCRDCGSRLTDCPICRQRITNRLRVFSS*






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