SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51330 | AT | Annotation by Michelle Graham. TAIR10: SWITCH1 | chr5:20858752-20861680 REVERSE LENGTH=639 | SoyBase | E_val: 1.00E-135 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0007065 | GO-bp | Annotation by Michelle Graham. GO Biological Process: male meiosis sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007066 | GO-bp | Annotation by Michelle Graham. GO Biological Process: female meiosis sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004629 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity | SoyBase | N/A | ISS |
| UniRef100_G8A2N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein DYAD n=1 Tax=Medicago truncatula RepID=G8A2N9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MIA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MIA9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g30830 not represented in the dataset |
Glyma15g30830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g217800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g30830.2 sequence type=CDS gene model=Glyma15g30830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGTGGAGCAAAGTTCGTGTGATTTCGTTGCTGCTGCTGCTGCTGAAGATATGGAGAGTTTGTACTTGAAGAGGCAAGAAAAAAGGAATGTCCACGTCGACGAGGGCAGAAGCAAAAGGAGTCCATTTTTGGACAAACCTCTGATGCTTCCACCTTCCTATGATTCAATCCGTGTCATAGGGGCCTTTGAACACTTTAAAGTTGGTCGATTTCATGAAATTGATCACTCCACGCTCTCACCCATTTCCCCAGTACAACTAAAATCTGTTCGCATTGTGATGGTCAGTGACATAGGGGAGCACCTGGTGTCGCTAAGGTACCCAAGCCTCCATTCCCTTCGCAAGCACTTCAGCGACCAAAGCTTTGGGAAACCAGACGGGAAGAAGATCCCAACTCTGGACGAGAAGTACGTGATGGGGATGGACATGGCCATCAAAGCCCTTGTTAGGAGCATCCCAACCGAGGAGTTTGCACAAAGGAGAAACTCTTGGAGCTTCTGGGTCTCCTCTCCCTCTAACGAAAACCCTCAAGAGTATGAGAATCCAGCTCTCATTGATGCTGCAAGGAGCCTCATTTGCAAGCAGGGTTCTTGCTGGTCTCAGCTCAAGTTCACAGGGATGGTGCAGTGGGGTGCACGCCGCCAAGTTCGGTTCTTGGGGCGTCACGAGGAGCAAAAGGTTGAATCTTTACCAAAAATGAGTAAAGAAAAAAGGGTCGGTGTTGAAGTCGGAGAAGGAGGGGGTTGTGAGAAGAAGAGGAAGAACGGTGAAGAAGAGGAGGAAATGGAGGGTACAAAGGCAGGGTCTTTGGGAGTTATGATGAGGGTGACTCGTCAATGTTGGAAAAATCATATTCAAAATGTGAGTAGTAGCAGCAGCGGGGTTAAAAAATCTAACAAAGCAAAGAATGACGACCCCATTAAGAAGCAAGTCGTGGTTTACAACGACAACAAGCGAAAAATCACGATCAACAGATGGTCTGCTGAGAGGTATAATTTGGCTGAGGAGAACATGTTGAAGGTAATGAAAGAGAAGGAAGCTGTATATGGGAACCCAATATTGAGGCCAGACTTGAGAACAGAAGCAAGAAAATATATTGGCGACACGGGTCTGCTTGATCATTTGCTGAAGCACATGGCTGGAAAATTGGCACCAGGAGGTGCTGAGAGATTCAGAAGGCGACACAATGCTGAGGGTGCAATGGAGTATTGGTTGGAAAGTGCTGATCTTGTTGATATCAGAAAGGAAGCAGGGGTACAAGACGCTTATTGGACTCCTCCCCCTGGATGGAAGCTTGGGGACCGCATTTCACATGATTATGTTACTCAGAGAGAACTCAGAGAGGTCATGGATGAAATCCTGAAGCTGAAACAAGAGATGCGAGATTTGGCATCAAAGAAGGGAGAGGAGGAGGCATTGGTCCTTGTTACTACTCCTAGCTTCTGTTTGTCTAGTTTGAATTCGGATGACTGTGGTTCCTTGGCTCCAACGCAGGAGATTTATGCAGAGTTGGTGAGTAAGAAGGCTAAACTAGAGGAACAATTGAAGGAAATTTCACTGACTTTGAGTGGCATGGAGGAGCAACTGAAAATGCTGAAACCAACAACAGTAGAAGAACAAACAGTGCCAGAATTGGCAACTCCACCAGCACTTTTACCTGGACCAACATCAGTGGTAGAAAACATTGGGGGAGAGACAAGAAAGGAAAAGAAAAGCCGCAACAAGAACAAAGCAACAAAATCAGCAGATGATACACAAATGCAAGAAAGTAACACTACTGCAGCAGAGGACAAAGCAGCAAAGATAAAAAGGCTGAAAAGTGGTTTCCAAATTTGCAACCCACAGGGTACCTTTGCGTGGCCAAACATGGGCTTGTCTCCCCAAGTTGTGGTCAGCAATGATGGTAATGATGATCACACTGTGGTCCCAACAACACCATCAGTTTCCTCTTCCTCCACCTCAGCTCCAAAACTCAGCATCTCCATACCCCAAACTCAACCTTTGCCACTGCAAATCCTGCACCTTCCTTCTTCCCCTGTGAAGCCACTTGCTGAGAGGCGCCCTGTGAGCACAGCTACTTTGACCCATGTTACTGGCCCATTCTCACCATCAGGGTCGACCCCAAGATCCAAAATCACCCACCATCACTATTAA
>Glyma15g30830.2 sequence type=predicted peptide gene model=Glyma15g30830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVEQSSCDFVAAAAAEDMESLYLKRQEKRNVHVDEGRSKRSPFLDKPLMLPPSYDSIRVIGAFEHFKVGRFHEIDHSTLSPISPVQLKSVRIVMVSDIGEHLVSLRYPSLHSLRKHFSDQSFGKPDGKKIPTLDEKYVMGMDMAIKALVRSIPTEEFAQRRNSWSFWVSSPSNENPQEYENPALIDAARSLICKQGSCWSQLKFTGMVQWGARRQVRFLGRHEEQKVESLPKMSKEKRVGVEVGEGGGCEKKRKNGEEEEEMEGTKAGSLGVMMRVTRQCWKNHIQNVSSSSSGVKKSNKAKNDDPIKKQVVVYNDNKRKITINRWSAERYNLAEENMLKVMKEKEAVYGNPILRPDLRTEARKYIGDTGLLDHLLKHMAGKLAPGGAERFRRRHNAEGAMEYWLESADLVDIRKEAGVQDAYWTPPPGWKLGDRISHDYVTQRELREVMDEILKLKQEMRDLASKKGEEEALVLVTTPSFCLSSLNSDDCGSLAPTQEIYAELVSKKAKLEEQLKEISLTLSGMEEQLKMLKPTTVEEQTVPELATPPALLPGPTSVVENIGGETRKEKKSRNKNKATKSADDTQMQESNTTAAEDKAAKIKRLKSGFQICNPQGTFAWPNMGLSPQVVVSNDGNDDHTVVPTTPSVSSSSTSAPKLSISIPQTQPLPLQILHLPSSPVKPLAERRPVSTATLTHVTGPFSPSGSTPRSKITHHHY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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