SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12710 | AT | Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein | chr3:4040572-4041828 REVERSE LENGTH=312 | SoyBase | E_val: 9.00E-134 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity | SoyBase | N/A | ISS |
| PF03352 | PFAM | Methyladenine glycosylase | JGI | ISS | |
| UniRef100_G7IT82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase n=2 Tax=Medicago truncatula RepID=G7IT82_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MIA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g30150 not represented in the dataset |
Glyma15g30150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g217300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g30150.1 sequence type=CDS gene model=Glyma15g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCGGCTCCAAGACCAAGGTGACTGTAGGCATAGAAGCCACAGCTACCTCTCTGGTGGCCAGAATCAATGGCCGGCCAGTCCTTCAACCGACTTGTAACCGAGTTCCTAACCTGGAGAGGAGAAATTCAATCAAGAAACTGTCACCAAAATCACGTTCTCCTCCATCACCACCACTTCTTAGCAAGACCTCATTGACACCTCCAGTTTCTCCAAAGTCCAAGTCCCCTAGGCCTCCACCTATAAAGCGAGGCAATGAGAGTAATGGACTTAACTCAAGTTCTGAAAAGATTGTGACCCCAAGAAACACCATAAAAACTCCAACTCTAGAGAGGAAAAAGTCCAAGAGTTTCAAGGAAGGGTCATGTGGTGCTTTAGGCCTTTCTGCCTCCACAGAGGCTTCATTAAGTTACTCCTCCACTTTGATCACTGAATCCCCAGGGAGCATAGCTGCAGTGAGGAGAGAACAGATGGCACTGCAGCATGCACAGAGAAAAATGAAGATTGCCCATTATGGAAGATCAAAGTCTGCAAAGTTTGCAAGAGTTATTCCTCTTGAACCTTCAACCAATCTTACTTCAAAGACAAGTGAGGAAAAGAGATGCAGCTTTATCACAGCCAATTCAGATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGATGTTGTTTGAACTTCTAGTTCTAAGTGGTGCTCAGGTTGGATCAGATTGGACCTCAATCTTGAAGAAACGCCAGGATTTCAGGACTGCATTTTCAGAATTTGATGCAGCAACTTTGGCCAACTTGACTGATAAGCAAATGGTGTCTATTAGTATGGAATATGACATTGATATAAGCAGAGTTCGAGGTGTTGTTGACAATGCTAACCGAATTTTAGCGATTAACAAGGACTTTGGTTCATTTGACAAATACATTTGGGATTTTGTCAATCACAAACCCATCTCCACGCAATACAAGTTCGGCCACAAGATCCCAGTGAAGACATCAAAGTCAGAGAGCATAAGCAAAGACATGATCAGAAGGGGCTTTAGGTGTGTAGGTCCAACGGTGCTTCATTCATTTATGCAAGCAGCTGGACTCACCAATGACCACTTAATCACTTGCCATAGACACTTGCAGTGCACCTTATTGGCATCAACCCCCCATTGTACCACAGAGCACTTTCTATAG
>Glyma15g30150.1 sequence type=predicted peptide gene model=Glyma15g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCGSKTKVTVGIEATATSLVARINGRPVLQPTCNRVPNLERRNSIKKLSPKSRSPPSPPLLSKTSLTPPVSPKSKSPRPPPIKRGNESNGLNSSSEKIVTPRNTIKTPTLERKKSKSFKEGSCGALGLSASTEASLSYSSTLITESPGSIAAVRREQMALQHAQRKMKIAHYGRSKSAKFARVIPLEPSTNLTSKTSEEKRCSFITANSDPIYIAYHDEEWGVPVHDDKMLFELLVLSGAQVGSDWTSILKKRQDFRTAFSEFDAATLANLTDKQMVSISMEYDIDISRVRGVVDNANRILAINKDFGSFDKYIWDFVNHKPISTQYKFGHKIPVKTSKSESISKDMIRRGFRCVGPTVLHSFMQAAGLTNDHLITCHRHLQCTLLASTPHCTTEHFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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