Glyma15g30150 - SoyBase

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Report for Sequence Feature Glyma15g30150

Feature Type:	gene_model
Chromosome:	Gm15
Start:	33313511
stop:	33316972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g30150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12710	AT	Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein \| chr3:4040572-4041828 REVERSE LENGTH=312	SoyBase	E_val: 9.00E-134	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity	SoyBase	N/A	ISS
PF03352	PFAM	Methyladenine glycosylase	JGI		ISS
UniRef100_G7IT82	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase n=2 Tax=Medicago truncatula RepID=G7IT82_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MIA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIA5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g30150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g30150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g217300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g30150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g30150

Limit To All Plant Sequences

>Glyma15g30150.1   sequence type=CDS   gene model=Glyma15g30150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCGGCTCCAAGACCAAGGTGACTGTAGGCATAGAAGCCACAGCTACCTCTCTGGTGGCCAGAATCAATGGCCGGCCAGTCCTTCAACCGACTTGTAACCGAGTTCCTAACCTGGAGAGGAGAAATTCAATCAAGAAACTGTCACCAAAATCACGTTCTCCTCCATCACCACCACTTCTTAGCAAGACCTCATTGACACCTCCAGTTTCTCCAAAGTCCAAGTCCCCTAGGCCTCCACCTATAAAGCGAGGCAATGAGAGTAATGGACTTAACTCAAGTTCTGAAAAGATTGTGACCCCAAGAAACACCATAAAAACTCCAACTCTAGAGAGGAAAAAGTCCAAGAGTTTCAAGGAAGGGTCATGTGGTGCTTTAGGCCTTTCTGCCTCCACAGAGGCTTCATTAAGTTACTCCTCCACTTTGATCACTGAATCCCCAGGGAGCATAGCTGCAGTGAGGAGAGAACAGATGGCACTGCAGCATGCACAGAGAAAAATGAAGATTGCCCATTATGGAAGATCAAAGTCTGCAAAGTTTGCAAGAGTTATTCCTCTTGAACCTTCAACCAATCTTACTTCAAAGACAAGTGAGGAAAAGAGATGCAGCTTTATCACAGCCAATTCAGATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGATGTTGTTTGAACTTCTAGTTCTAAGTGGTGCTCAGGTTGGATCAGATTGGACCTCAATCTTGAAGAAACGCCAGGATTTCAGGACTGCATTTTCAGAATTTGATGCAGCAACTTTGGCCAACTTGACTGATAAGCAAATGGTGTCTATTAGTATGGAATATGACATTGATATAAGCAGAGTTCGAGGTGTTGTTGACAATGCTAACCGAATTTTAGCGATTAACAAGGACTTTGGTTCATTTGACAAATACATTTGGGATTTTGTCAATCACAAACCCATCTCCACGCAATACAAGTTCGGCCACAAGATCCCAGTGAAGACATCAAAGTCAGAGAGCATAAGCAAAGACATGATCAGAAGGGGCTTTAGGTGTGTAGGTCCAACGGTGCTTCATTCATTTATGCAAGCAGCTGGACTCACCAATGACCACTTAATCACTTGCCATAGACACTTGCAGTGCACCTTATTGGCATCAACCCCCCATTGTACCACAGAGCACTTTCTATAG

Predicted protein sequences of Glyma15g30150

Limit To All Plant Sequences

>Glyma15g30150.1   sequence type=predicted peptide   gene model=Glyma15g30150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGSKTKVTVGIEATATSLVARINGRPVLQPTCNRVPNLERRNSIKKLSPKSRSPPSPPLLSKTSLTPPVSPKSKSPRPPPIKRGNESNGLNSSSEKIVTPRNTIKTPTLERKKSKSFKEGSCGALGLSASTEASLSYSSTLITESPGSIAAVRREQMALQHAQRKMKIAHYGRSKSAKFARVIPLEPSTNLTSKTSEEKRCSFITANSDPIYIAYHDEEWGVPVHDDKMLFELLVLSGAQVGSDWTSILKKRQDFRTAFSEFDAATLANLTDKQMVSISMEYDIDISRVRGVVDNANRILAINKDFGSFDKYIWDFVNHKPISTQYKFGHKIPVKTSKSESISKDMIRRGFRCVGPTVLHSFMQAAGLTNDHLITCHRHLQCTLLASTPHCTTEHFL*

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