Glyma15g30001 - SoyBase

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Report for Sequence Feature Glyma15g30001

Feature Type:	gene_model
Chromosome:	Gm15
Start:	33054633
stop:	33066836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Expression Patterns of Glyma15g30001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g30001 not represented in the dataset	Glyma15g30001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g30001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g216500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g30001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g30001

Limit To All Plant Sequences

>Glyma15g30001.2   sequence type=transcript   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAAGAAACCAAACGGAGGAAGCAAGTCGGTGAAGATGGAAGAGATGAAAGCAGGTTTCAAGACGGGAGAAGACTGCAGAAGAAGACACGTGGAGCACCCACAGAAGAAAACAGGAATTTGCTGCACGCGGTGACCCAATTCGGTTTCAGTTCATCTTCTCTTTTCCGCAAGCAAAACCCCACATTCTTCTTCATGAACCCTAATTCACTCTTTCCATTCCAAATCTCAATCACCTTTCTGATTCAATCTTTATCTCCTCGCCAATCTCTTCATTTGCCTCGCAAATCAAGGTCTATGTGGAGCTTGTAGGCTTTGAATCTTCTTCATCAATGGAGTCCTTTGCTTCTTGAAGTTCAATGGCAACGAAATAGAGAAGAAAGAAAGATGATGATTGGAGACGCCACTTCAACGAGAAGATTAGTCAATAACAAGCTCACCACCATAGGAAGCCATAGATAAGAGCTTGAAGGTAGGAGAAGATGAGTGGAGGGAGAAGGAGCATGAAATTTTGTGCCTCAAATGAGGTCTGAAC

>Glyma15g30001.3   sequence type=transcript   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAAGAAACCAAACGGAGGAAGCAAGTCGGTGAAGATGGAAGAGATGAAAGCAGGTTTCAAGACGGGAGAAGACTGCAGAAGAAGACACGTGGAGCACCCACAGAAGAAAACAGGAATTTGCTGCACGCGGTGACCCAATTCGGTTTCAGTTCATCTTCTCTTTTCCGCAAGCAAAACCCCACATTCTTCTTCATGAACCCTAATTCACTCTTTCCATTCCAAATCTCAATCACCTTTCTGATTCAATCTTTATCTCCTCGCCAATCTCTTCATTTGCCTCGCAAATCAAGAAAAAATATGATGTAACATATATGATTGCGAGATGGAGATGTAATCAAATAAAGGAAAAAGGTTGCTCCTATTTTTCATTGAAAATTCTTAAGG

Coding sequences of Glyma15g30001

Limit To All Plant Sequences

>Glyma15g30001.1   sequence type=CDS   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAAGAAACCAAACGGAGGAAGCAAGTCGGTGAAGATGGAAGAGATGAAAGCAGGTTTCAAGACGGGAGAAGACTGCAGAAGAAGACACGTGGAGCACCCACAGAAGAAAACAGGAATTTGCTGCACGCGGTGACCCAATTCGGTTTCAGTTCATCTTCTCTTTTCCGCAAGCAAAACCCCACATTCTTCTTCATGAACCCTAATTCACTCTTTCCATTCCAAATCTCAATCACCTTTCTGATTCAATCTTTATCTCCTCGCCAATCTCTTCATTTGCCTCGCAAATCAAGGTCTATGTGGAGCTTGTAG

>Glyma15g30001.2   sequence type=CDS   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAAGAAACCAAACGGAGGAAGCAAGTCGGTGAAGATGGAAGAGATGAAAGCAGGTTTCAAGACGGGAGAAGACTGCAGAAGAAGACACGTGGAGCACCCACAGAAGAAAACAGGAATTTGCTGCACGCGGTGACCCAATTCGGTTTCAGTTCATCTTCTCTTTTCCGCAAGCAAAACCCCACATTCTTCTTCATGAACCCTAATTCACTCTTTCCATTCCAAATCTCAATCACCTTTCTGATTCAATCTTTATCTCCTCGCCAATCTCTTCATTTGCCTCGCAAATCAAGGTCTATGTGGAGCTTGTAG

>Glyma15g30001.3   sequence type=CDS   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAAGAAACCAAACGGAGGAAGCAAGTCGGTGAAGATGGAAGAGATGAAAGCAGGTTTCAAGACGGGAGAAGACTGCAGAAGAAGACACGTGGAGCACCCACAGAAGAAAACAGGAATTTGCTGCACGCGGTGACCCAATTCGGTTTCAGTTCATCTTCTCTTTTCCGCAAGCAAAACCCCACATTCTTCTTCATGAACCCTAATTCACTCTTTCCATTCCAAATCTCAATCACCTTTCTGATTCAATCTTTATCTCCTCGCCAATCTCTTCATTTGCCTCGCAAATCAAGAAAAAATATGATGTAA

Predicted protein sequences of Glyma15g30001

Limit To All Plant Sequences

>Glyma15g30001.1   sequence type=predicted peptide   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKETKRRKQVGEDGRDESRFQDGRRLQKKTRGAPTEENRNLLHAVTQFGFSSSSLFRKQNPTFFFMNPNSLFPFQISITFLIQSLSPRQSLHLPRKSRSMWSL*

>Glyma15g30001.2   sequence type=predicted peptide   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKETKRRKQVGEDGRDESRFQDGRRLQKKTRGAPTEENRNLLHAVTQFGFSSSSLFRKQNPTFFFMNPNSLFPFQISITFLIQSLSPRQSLHLPRKSRSMWSL*

>Glyma15g30001.3   sequence type=predicted peptide   gene model=Glyma15g30001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKETKRRKQVGEDGRDESRFQDGRRLQKKTRGAPTEENRNLLHAVTQFGFSSSSLFRKQNPTFFFMNPNSLFPFQISITFLIQSLSPRQSLHLPRKSRKNMM*

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