SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04895 | AT | Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161 | SoyBase | E_val: 1.00E-171 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | ISS | |
| PTHR18934:SF68 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00035 | PFAM | Double-stranded RNA binding motif | JGI | ISS | |
| PF07717 | PFAM | Domain of unknown function (DUF1605) | JGI | ISS | |
| UniRef100_G8A1Q2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase A-like protein (Fragment) n=1 Tax=Medicago truncatula RepID=G8A1Q2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MI94 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI94_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g29913 not represented in the dataset |
Glyma15g29913 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g216000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g29913.1 sequence type=CDS gene model=Glyma15g29913 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGAAAGAGAAGGGTCGGCTTACGAGTACTGCTGGAGAAATTTTCTATCAGCCCAAACTCTTCAGGTTATTCATTCACTATAGAAACAAAGCGAGTGTCATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAGTCATATGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTCAAAACAATGGATGATGGCCAGGTTTTATTGTATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCTTGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGGTATGTTGACTTCTTCATGGATCATAATTTAGCTGACAGCTATGTGAAGCTTAAGGAAGAGCTCAATAAGCTTATCCAGAAGAAGCTGGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAATACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGGTTTGTATTTGGCCGCGAAAGCCGGAAGCCTAAGGCCTCCAATGATGAAAACAAATTTACGAAAGATGGAACAAATCCCAAGAGCTTGCTGCAGACACTGTTGATGCGAGCAGGGCACTCCCCACCAAAATACAAAACGAAACATCTTAAGACAAATGAGTTTAGGGCACTGGTGGAGTTCAAGGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCAGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAATCAGCATGAAGATGATAAGTCTCCTCCTGATATAACTGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCAAGGCCATGGTTGA
>Glyma15g29913.1 sequence type=predicted peptide gene model=Glyma15g29913 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKEKGRLTSTAGEIFYQPKLFRLFIHYRNKASVINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDHNLADSYVKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDITDNMLKLLGKRRKSKQGHG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
