SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04900 | AT | Annotation by Michelle Graham. TAIR10: NYC1-like | chr5:1434826-1437194 FORWARD LENGTH=348 | SoyBase | E_val: 5.00E-180 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0034256 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chlorophyll(ide) b reductase activity | SoyBase | N/A | ISS |
| KOG0725 | KOG | Reductases with broad range of substrate specificities | JGI | ISS | |
| PTHR24314 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24314:SF37 | Panther | JGI | ISS | ||
| PF00106 | PFAM | short chain dehydrogenase | JGI | ISS | |
| UniRef100_I1MI92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI92_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8LEU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chlorophyll(ide) b reductase NOL, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=NOL_ARATH | SoyBase | E_val: 3.00E-177 | ISS |
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Glyma15g29900 not represented in the dataset |
Glyma15g29900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g215900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g29900.3 sequence type=transcript gene model=Glyma15g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAACCACCACACAAATCGTTAAACACAACCCCCGAGAGCAACTATCCCTTCTTCCTTTCTCTCTTCTATTCTCATTCGCATTTCGCACCAAGTCAATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGAACTGCATAAATATTTGTGCTATGTGCAACTTTTATTTCTTGTTTTAAATATCTATTCATCCCCCCACTCCATTTTTTAAAAACTTTTGTAGCATTCTTTACCTCAAAGTGAAACTTAAATTTACATGTTTGACGGTAGGATATAGGTTACAAAATAACTTTGGTTAGCTGCAAAAGAAAAAAAAAACTTGGTTAGAGCTACCATTAGGCAATGAGTAAGTATTAAATGAATCATCAAAACCTTTGATATCTTAAAACATAGAAAGAATTAATTAATTCTTATTTCATTTAGTGACAAATAAAATTATGGAGAAGACTATGTCCTTAGAGTACAAATCAAAAGGTTTATAGAAAAGTGATACTCATCATAATTTTAAA
>Glyma15g29900.1 sequence type=CDS gene model=Glyma15g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCTGTCCCTGCAAATGGATCAATGAAACCAACATACATTCGATTCCTCACGGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGA >Glyma15g29900.3 sequence type=CDS gene model=Glyma15g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGA
>Glyma15g29900.1 sequence type=predicted peptide gene model=Glyma15g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTTTLSFHFPYPTTSTLSSHSQLSPSPQPSQFKPCTVASRQNLCTSNTLSVSASRKNSTSPIFLATASGKSEPMLPPFNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVKTAVQNLRVEFGEQHVWGTKCDVKNAEDVKNLVSFAQEKMKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVVAEYLVPNIRSVPANGSMKPTYIRFLTGLKAYSQIFSRLAFGARRNRYILED* >Glyma15g29900.3 sequence type=predicted peptide gene model=Glyma15g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTTTLSFHFPYPTTSTLSSHSQLSPSPQPSQFKPCTVASRQNLCTSNTLSVSASRKNSTSPIFLATASGKSEPMLPPFNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVKTAVQNLRVEFGEQHVWGTKCDVKNAEDVKNLVSFAQEKMKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVRLAFGARRNRYILED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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