Glyma15g29620 - SoyBase

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Report for Sequence Feature Glyma15g29620

Feature Type:	gene_model
Chromosome:	Gm15
Start:	32424971
stop:	32427608
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g29620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79430	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr1:29877521-29879135 REVERSE LENGTH=358	SoyBase	E_val: 2.00E-124	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010088	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem development	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_E5L8F7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IPN2 n=1 Tax=Lotus japonicus RepID=E5L8F7_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1MI86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g29620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g29620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g215000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g29620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g29620

Limit To All Plant Sequences

>Glyma15g29620.1   sequence type=CDS   gene model=Glyma15g29620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGACAGGTCCATGTGTGTGCAAGGGGACTCAGGGCTTGTCCTCACCACTGACCCAAAGCCACGCCTCCGTTGGACTGTTGAACTACATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGAGTGAAGGGTCTCACCCTTTACCACCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGATTTCAATGACCACTCGATTAAGGATGGCATGAGAGCTTCGGCTTTAGAACTTCAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAAAAGAACCTTCAGCTGAGGATTGAGGCTCAAGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACACTAGCAGGAGAAAACATGGCCACAAACATGAAGGGTATGGGAGCTCCTCTAGGCACCACTGAAATGGGGGTCATGAAGGAATTTGGTTCTCTCAATTACCCTTCTTTTCAAGATCTTAACATTTATGCCAGTGGTGACCAACAACTTGATGGCTTTATGCCATCTAATAATAACAATGAAACTTTGTTTGTGGGTAAGAAGAGGCCTAATTGCCCCTATAGTGGTAGTGGAAAGAGTCCACTGATTTGGAGTGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGTCCTCAAGATGACCCTTTCAAAGGTGATCATAAGGTTCAGATTTCACCACCATCAATGGATAGTGATCCCATATCGGAGATTTATGACACAAAACCAATGATACTCCATGGAGAAAGTGTAAGTGATCAGAACAAATTTGATGCATCTATGAAGGTAGAAAGGCCTTCTCCAAAAAGATCACCACTTCAACCAGATAGGACTAGTCCTATGATCAATTCTAGTTCTGTGGCACAAGGTAGAAGCTCCCCATTTGGTTGA

Predicted protein sequences of Glyma15g29620

Limit To All Plant Sequences

>Glyma15g29620.1   sequence type=predicted peptide   gene model=Glyma15g29620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERMFPPKKPSTMNSHDRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMATNMKGMGAPLGTTEMGVMKEFGSLNYPSFQDLNIYASGDQQLDGFMPSNNNNETLFVGKKRPNCPYSGSGKSPLIWSDDLRLQDLGTASSCISPQDDPFKGDHKVQISPPSMDSDPISEIYDTKPMILHGESVSDQNKFDASMKVERPSPKRSPLQPDRTSPMINSSSVAQGRSSPFG*

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