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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g28641

Feature Type:gene_model
Chromosome:Gm15
Start:31217538
stop:31218932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g28641
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57410AT Annotation by Michelle Graham. TAIR10: Afadin/alpha-actinin-binding protein | chr5:23265102-23267641 REVERSE LENGTH=373 SoyBaseE_val: 3.00E-25ISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR21736Panther VERNALIZATION-INSENSITIVE PROTEIN 3 JGI ISS
PTHR21736:SF19Panther UNKNOWN PROTEIN JGI ISS
UniRef100_C6THT9UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6THT9_SOYBN SoyBaseE_val: 9.00E-28ISS
UniRef100_G7JVE2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Afadin-and alpha-actinin-binding protein n=1 Tax=Medicago truncatula RepID=G7JVE2_MEDTR SoyBaseE_val: 3.00E-25ISS

Expression Patterns of Glyma15g28641
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g28641 not represented in the dataset
Glyma15g28641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g28641 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g213500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g28641
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g28641
>Glyma15g28641.1   sequence type=CDS   gene model=Glyma15g28641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCACTAACAGAGACTTAGATGTTAGGACATTTGCCGATGAGGAGAATTTGGAGCATTACGCTAAGTATCTCAACCAATCGCTCATCACATTTGGTTTCCCGGCTTCGCTCGATCTCTTCACAAATCACCCCATGAGAATTGAACTAATCCCACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGGTCAACTACAAGTCAAAGACAAGGACATAGCGACTATTACTAGAACAGTGGACGCTTATGAGTCAAAAAATCAAGAACTGGTGGCAGAGAATGATGATTTAAGAGCATTATTGAGATCAATGCAAGTAGAGATTCGCAATTTTAGAAAACAACCAGGCACAAACTGA
Predicted protein sequences of Glyma15g28641
>Glyma15g28641.1   sequence type=predicted peptide   gene model=Glyma15g28641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLTNRDLDVRTFADEENLEHYAKYLNQSLITFGFPASLDLFTNHPMRIELIPLLSDISRLEAKVERLEGQLQVKDKDIATITRTVDAYESKNQELVAENDDLRALLRSMQVEIRNFRKQPGTN*






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