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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16520 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325 | SoyBase | E_val: 2.00E-141 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MI66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MI66_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q75GP1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q75GP1_ORYSJ | SoyBase | E_val: 4.00E-128 | ISS |
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Glyma15g27790 not represented in the dataset |
Glyma15g27790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g212200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g27790.3 sequence type=transcript gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAATGATTGCTTATGACGAGGTTTGGGCCAAGGATTGACATTTATTTTAGTTTCCCTCGTTGATTCCACAACCAGCTGGGCATCAAGAAAACCCAGCCAACAACCACAACCAAACAGGGTGGATAGGGATGTCGCAGCAGGGCACAGGTTCAGTGGTGGATTTCGACCTCCCCGACGAGATTCTGTCGGTGATACCAACGGACCCATACCAGCAGCTGGATCTGGCTCGCAAGATAACCTCCATGGCCATTGCCTCCCGTGTCTCTTCTCTCGAATCCGATGCATCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCTTCCCACCAATCCGACTCCACCCTCAACACCGCCCTCAACGAAAACATAAAGCTTACGAAGGAGAGGGATCAATTGGCAGCAACAGTGAAGAAGCTAAGTCGAGACTTCGCCAAGTTGGAGACATTTAAAAAACAATTGATGCAGTCGCTAACTGATGACAATGCATTGCATGCTGAAACTACAGATATTGGAACCTGTGACCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATCGAAGTGGCAATATGGCACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGACGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACGGGAACTCCAAAGGTGATTTCAACGGCTGGGTCTCCTAGAGGATATTCTGCAGCTGTATCACCCAAGAAAACTTCTGGTTTTACCTCTCCTACAAAACTTCCATATGATGGGCGCACATCTCTCTCTTCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCACGGGGACGATCGCTTCCAGGTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTGTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAGTACTGAAAGCAGCATTGCTGAGTATTGTATGAGTTGTTGTCTCTAGCCACCGTTGACCATTGCCATTTTTTTCTAATGATCATTGGATCTGGTGTGCCTCACCAAGTGCGGCCTAACCTAGAAGGTTTCGAAGTCCAAAACCCTATAACGTGCCCACATGTGTCGTTCTGTGACTCTGCCAGGCGTGTGCTGCTAATGCGTCAGTCTCCGGAACTCAGGCACAACACCACGGTTACTGAGCCAACTTGGGTTTCTTGGACCAATATTGACTTTCTTCTTCGATCCATTGAATCAAAATCAAAAGAAGCACTATTATGAGCCATTGAATTTGGGGTTGTTGTTATGCTCACCTAGCACAATTGCTGGTACATCCAGCAAAACAGTAAAATTCCATCTTTGCCCCTTTGTAGAGCTAATACGGATTGACGAATTCGTAAGTCTCATACAGATTCACCAATACGGATGAGGCATGCTTACGGATTCACCTATCCGTATGGCATCATTTAGGCCTCATATGTAAGCGGAATACGGATTGGTCAATCCGTATTGGGCTTACGGATTGTCAATTTGTATGAGGTTTAAACAATTTTTTGCAATATTTTCTTAATGGCATGCACTTCTAGTTAAAATGGTGAATGAATTTTGCAAGGTTTTGGTTTATTCAACGAGTGTCATGGGAATTTTTTTAAGATGAATGTGGCAACACTCAATCTGATCTGCAAGTAAAAATAATAGTTTGAATGTTATATGACCAATGTAGTTAATGCAAAAAATGTGCTCTATACAAAAAATTAGTTACCTATAATGATATTGGATTATTTTTTATGAGTAAATTTTATCAAGGGAAAAGGAATAATGTAAAAGG >Glyma15g27790.4 sequence type=transcript gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAATGATTGCTTATGACGAGGTTTGGGCCAAGGATTGACATTTATTTTAGTTTCCCTCGTTGATTCCACAACCAGCTGGGCATCAAGAAAACCCAGCCAACAACCACAACCAAACAGGGTGGATAGGGATGTCGCAGCAGGGCACAGGTTCAGTGGTGGATTTCGACCTCCCCGACGAGATTCTGTCGGTGATACCAACGGACCCATACCAGCAGCTGGATCTGGCTCGCAAGATAACCTCCATGGCCATTGCCTCCCGTGTCTCTTCTCTCGAATCCGATGCATCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCTTCCCACCAATCCGACTCCACCCTCAACACCGCCCTCAACGAAAACATAAAGCTTACGAAGGAGAGGGATCAATTGGCAGCAACAGTGAAGAAGCTAAGTCGAGACTTCGCCAAGTTGGAGACATTTAAAAAACAATTGATGCAGTCGCTAACTGATGACAATGCATTGCATGCTGAAACTACAGATATTGGAACCTGTGACCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATCGAAGTGGCAATATGGCACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGACGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACGGGAACTCCAAAGGTGATTTCAACGGCTGGGTCTCCTAGAGGATATTCTGCAGCTGTATCACCCAAGAAAACTTCTGGTTTTACCTCTCCTACAAAACTTCCATATGATGGGCGCACATCTCTCTCTTCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCACGGGGACGATCGCTTCCAGGTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTGTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAGTACTGAAAGCAGCATTGCTGAGTATTGTATGAGTTGGTTACTGAGCCAACTTGGGTTTCTTGGACCAATATTGACTTTCTTCTTCGATCCATTGAATCAAAATCAAAAGAAGCACTATTATGAGCCATTGAATTTGGGGTTGTTGTTATGCTCACCTAGCACAATTGCTGGTACATCCAGCAAAACAGTAAAATTCCATCTTTGCCCCTTTGTAGAGCTAATACGGATTGACGAATTCGTAAGTCTCATACAGATTCACCAATACGGATGAGGCATGCTTACGGATTCACCTATCCGTATGGCATCATTTAGGCCTCATATGTAAGCGGAATACGGATTGGTCAATCCGTATTGGGCTTACGGATTGTCAATTTGTATGAGGTTTAAACAATTTTTTGCAATATTTTCTTAATGGCATGCACTTCTAGTTAAAATGGTGAATGAATTTTGCAAGGTTTTGGTTTATTCAACGAGTGTCATGGGAATTTTTTTAAGATGAATGTGGCAACACTCAATCTGATCTGCAAGTAAAAATAATAGTTTGAATGTTATATGACCAATGTAGTTAATGCAAAAAATGTGCTCTATACAAAAAATTAGTTACCTATAATGATATTGGATTATTTTTTATGAGTAAATTTTATCAAGGGAAAAGGAATAATGTAAAAGG
>Glyma15g27790.2 sequence type=CDS gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCAGCAGGGCACAGGTTCAGTGGTGGATTTCGACCTCCCCGACGAGATTCTGTCGGTGATACCAACGGACCCATACCAGCAGCTGGATCTGGCTCGCAAGATAACCTCCATGGCCATTGCCTCCCGTGTCTCTTCTCTCGAATCCGATGCATCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCTTCCCACCAATCCGACTCCACCCTCAACACCGCCCTCAACGAAAACATAAAGCTTACGAAGGAGAGGGATCAATTGGCAGCAACAGTGAAGAAGCTAAGTCGAGACTTCGCCAAGTTGGAGACATTTAAAAAACAATTGATGCAGTCGCTAACTGATGACAATGCATTGCATGCTGAAACTACAGATATTGGAACCTGTGACCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATCGAAGTGGCAATATGGCACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGACGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACGGGAACTCCAAAGGTGATTTCAACGGCTGGGTCTCCTAGAGGATATTCTGCAGCTGTATCACCCAAGAAAACTTCTGGTTTTACCTCTCCTACAAAACTTCCATATGATGGGCGCACATCTCTCTCTTCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCACGGGGACGATCGCTTCCAGGTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTGTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAG >Glyma15g27790.3 sequence type=CDS gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCAGCAGGGCACAGGTTCAGTGGTGGATTTCGACCTCCCCGACGAGATTCTGTCGGTGATACCAACGGACCCATACCAGCAGCTGGATCTGGCTCGCAAGATAACCTCCATGGCCATTGCCTCCCGTGTCTCTTCTCTCGAATCCGATGCATCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCTTCCCACCAATCCGACTCCACCCTCAACACCGCCCTCAACGAAAACATAAAGCTTACGAAGGAGAGGGATCAATTGGCAGCAACAGTGAAGAAGCTAAGTCGAGACTTCGCCAAGTTGGAGACATTTAAAAAACAATTGATGCAGTCGCTAACTGATGACAATGCATTGCATGCTGAAACTACAGATATTGGAACCTGTGACCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATCGAAGTGGCAATATGGCACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGACGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACGGGAACTCCAAAGGTGATTTCAACGGCTGGGTCTCCTAGAGGATATTCTGCAGCTGTATCACCCAAGAAAACTTCTGGTTTTACCTCTCCTACAAAACTTCCATATGATGGGCGCACATCTCTCTCTTCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCACGGGGACGATCGCTTCCAGGTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTGTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAG >Glyma15g27790.4 sequence type=CDS gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCAGCAGGGCACAGGTTCAGTGGTGGATTTCGACCTCCCCGACGAGATTCTGTCGGTGATACCAACGGACCCATACCAGCAGCTGGATCTGGCTCGCAAGATAACCTCCATGGCCATTGCCTCCCGTGTCTCTTCTCTCGAATCCGATGCATCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCTTCCCACCAATCCGACTCCACCCTCAACACCGCCCTCAACGAAAACATAAAGCTTACGAAGGAGAGGGATCAATTGGCAGCAACAGTGAAGAAGCTAAGTCGAGACTTCGCCAAGTTGGAGACATTTAAAAAACAATTGATGCAGTCGCTAACTGATGACAATGCATTGCATGCTGAAACTACAGATATTGGAACCTGTGACCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATCGAAGTGGCAATATGGCACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGACGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACGGGAACTCCAAAGGTGATTTCAACGGCTGGGTCTCCTAGAGGATATTCTGCAGCTGTATCACCCAAGAAAACTTCTGGTTTTACCTCTCCTACAAAACTTCCATATGATGGGCGCACATCTCTCTCTTCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCACGGGGACGATCGCTTCCAGGTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTGTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAG
>Glyma15g27790.2 sequence type=predicted peptide gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQQGTGSVVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDASRLRQKLLEKDRIILDLEDRLSSLTRASHQSDSTLNTALNENIKLTKERDQLAATVKKLSRDFAKLETFKKQLMQSLTDDNALHAETTDIGTCDQSVPKAYPDKDDDRSGNMAHHSYNGPADVGKTNDEASRYSGQRFSLTPYITPRLTPTGTPKVISTAGSPRGYSAAVSPKKTSGFTSPTKLPYDGRTSLSSWYSSSQQSSAANSPPRGRSLPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNAR* >Glyma15g27790.3 sequence type=predicted peptide gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQQGTGSVVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDASRLRQKLLEKDRIILDLEDRLSSLTRASHQSDSTLNTALNENIKLTKERDQLAATVKKLSRDFAKLETFKKQLMQSLTDDNALHAETTDIGTCDQSVPKAYPDKDDDRSGNMAHHSYNGPADVGKTNDEASRYSGQRFSLTPYITPRLTPTGTPKVISTAGSPRGYSAAVSPKKTSGFTSPTKLPYDGRTSLSSWYSSSQQSSAANSPPRGRSLPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNAR* >Glyma15g27790.4 sequence type=predicted peptide gene model=Glyma15g27790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQQGTGSVVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDASRLRQKLLEKDRIILDLEDRLSSLTRASHQSDSTLNTALNENIKLTKERDQLAATVKKLSRDFAKLETFKKQLMQSLTDDNALHAETTDIGTCDQSVPKAYPDKDDDRSGNMAHHSYNGPADVGKTNDEASRYSGQRFSLTPYITPRLTPTGTPKVISTAGSPRGYSAAVSPKKTSGFTSPTKLPYDGRTSLSSWYSSSQQSSAANSPPRGRSLPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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