Glyma15g27750 - SoyBase

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Report for Sequence Feature Glyma15g27750

Feature Type:	gene_model
Chromosome:	Gm15
Start:	30321568
stop:	30324659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g27750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14770	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr3:4957787-4959202 REVERSE LENGTH=236	SoyBase	E_val: 6.00E-109	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_G7ZV40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7ZV40_MEDTR	SoyBase	E_val: 5.00E-142	ISS
UniRef100_I1MI63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI63_SOYBN	SoyBase	E_val: 4.00E-164	ISS

Proteins Associated with Glyma15g27750

Locus	Gene Symbol	Protein Name
	SWEET42	sucrose effluxer gene 42

Expression Patterns of Glyma15g27750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g27750 not represented in the dataset	Glyma15g27750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g27750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g211800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g27750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g27750

Limit To All Plant Sequences

>Glyma15g27750.3   sequence type=transcript   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGACTACATAGAATATTCGCATCATATATACCTTTATCTAATCGAGGTGGATCACAAAACAAAACAATGTTTTATCTAACTTTTAGTTAATACTTTATTGCAGGCAGCATGTTTGAGTCTAATTGTGGAAACTTATATCCATAAGTTCGTACTTCATTGCATAAAAATAATTCTGGAAGCATTAAGATCCACGTAAGCAAGGAAATGAAATTAGGTACAGTATATGGCGCAAAAAGCGTTTTCTTTGTGGAGTCGTTCTGTCAAGTGCCACTGCCAGCTACGGTCAATTATTATTATGACTAGGAATAAGAAGACGCGAAAGCTAAAGCATGCCACAGTGTCTTGTCTTAAGAACTGATCAACCCAATCATTAGATTTTAGCAAACGTGGGCGATTTCGATTTTGACTAGACAAAAAACAGATAGAAATTTGGTTTGTTTGTACCATAAAATTGTATGTACTATAAACTGAGGGTTTATTAAGTTTATCTCTGTTAAAGTTGGTTTGTTGATTCAACAGCGATGTCTCTGTTTGGTGCTTACTCTATCTGTGAAGTTGGCAAGGATGCGGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGTTTGTTTGTGTCCCCCATACCGACATTTAGGAGAATCATCCGAAATGGGTCAACAGAAATGTTCTCCGGGTTGCCATATATTTATTCTCTCTTGAACTGCATGATCTGCTTGTGGTATGGCACACCCCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCTATTGGAGCAGCCTTTCAGCTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGCAATGCGCCGGATGTTTGTCGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTAGTGATTCGGACAAAAAGTATTGAGTTTATGCCGTTTTATCTTTCACTTTCCACCTTCCTGATGAGCTTCTCCTTCTTTCTTTATGGATTGCTCAGTGATGATGCCTTCATTTATGTACCAAATGGGATAGGAACTGTTTTAGGAATAATACAATTGGTATTATATTTCTATTATAAAGGTTCATCCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTACGAATGATCTGTGCTGTGCTGCTGAATGATGGCAAAGTGAAGGTTGGGGTTCAGTACTTGGTCTAATAGGAAATCACTTGTTGCCGGAACATTATTTTAGAACTATATCTTAATGCAATGCCAATGCACAAATGTATAACCAAATTGCATGTCAGCATGAATTATGCAGTTAAAATATTGTTAAAAGTAAGATTAGGACCATTAGCTGACTGAAGCGAAGCACCATTAAAGAATAGTGTTAAAATTTGGCATCTTCATAAAAATAGGATTTCCCGGTAAATCAAGTATTAAATTAACAAAAGAAAATTGTAAATGATCTCCTACTTGATAACATGTTAGTTACTGTATACCATTCTGTGTTTCTATATTTTCCAG

>Glyma15g27750.4   sequence type=transcript   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGACTACATAGAATATTCGCATCATATATACCTTTATCTAATCGAGGTGGATCACAAAACAAAACAATGTTTTATCTAACTTTTAGTTAATACTTTATTGCAGGCAGCATGTTTGAGTCTAATTGTGGAAACTTATATCCATAAGTTCGTACTTCATTGCATAAAAATAATTCTGGAAGCATTAAGATCCACGTAAGCAAGGAAATGAAATTAGGTACAGTATATGGCGCAAAAAGCGTTTTCTTTGTGGAGTCGTTCTGTCAAGTGCCACTGCCAGCTACGGTCAATTATTATTATGACTAGGAATAAGAAGACGCGAAAGCTAAAGCATGCCACAGTGTCTTGTCTTAAGAACTGATCAACCCAATCATTAGATTTTAGCAAACGTGGGCGATTTCGATTTTGACTAGACAAAAAACAGATAGAAATTTGGTTTGTTTGTACCATAAAATTGTATGTACTATAAACTGAGGGTTTATTAAGTTTATCTCTGTTAAAGTTGGTTTGTTGATTCAACAGCGATGTCTCTGTTTGGTGCTTACTCTATCTGTGAAGTTGGCAAGGATGCGGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGTTTGTTTGTGTCCCCCATACCGACATTTAGGAGAATCATCCGAAATGGGTCAACAGAAATGTTCTCCGGGTTGCCATATATTTATTCTCTCTTGAACTGCATGATCTGCTTGTGGTATGGCACACCCCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCTATTGGAGCAGCCTTTCAGCTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGCAATGCGCCGGATGTTTGTCGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTAGTGATTCGGACAAAAAGTATTGAGTTTATGCCGTTTTATCTTTCACTTTCCACCTTCCTGATGAGCTTCTCCTTCTTTCTTTATGGATTGCTCAGTGATGATGCCTTCATTTATGTACCAAATGGGATAGGAACTGTTTTAGGAATAATACAATTGGTATTATATTTCTATTATAAAGGTTCATCCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTACGAATGATCTGTGCTGTGCTGCTGAATGATGGCAAAGTGAAGGTATAACCAAATGCACAATATGTGATCAAGATTTATGGTCTTCACATCAGTGTGAGGTGGTTCTCTGAAATTAGTTGGGGTTCAGTACTTGGTCTAATAGGAAATCACTTGTTGCCGGAACATTATTTTAGAACTATATCTTAATGCAATGCCAATGCACAAATGTATAACCAAATTGCATGTCAGCATGAATTATGCAGTTAAAATATTGTTAAAAGTAAGATTAGGACCATTAGCTGACTGAAGCGAAGCACCATTAAAGAATAGTGTTAAAATTTGGCATCTTCATAAAAATAGGATTTCCCGGTAAATCAAGTATTAAATTAACAAAAGAAAATTGTAAATGATCTCCTACTTGATAACATGTTAGTTACTGTATACCATTCTGTGTTTCTATATTTTCCAG

Coding sequences of Glyma15g27750

Limit To All Plant Sequences

>Glyma15g27750.2   sequence type=CDS   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGTTTGGTGCTTACTCTATCTGTGAAGTTGGCAAGGATGCGGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGTTTGTTTGTGTCCCCCATACCGACATTTAGGAGAATCATCCGAAATGGGTCAACAGAAATGTTCTCCGGGTTGCCATATATTTATTCTCTCTTGAACTGCATGATCTGCTTGTGGTATGGCACACCCCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCTATTGGAGCAGCCTTTCAGCTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGCAATGCGCCGGATGTTTGTCGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTAGTGATTCGGACAAAAAGTATTGAGTTTATGCCGTTTTATCTTTCACTTTCCACCTTCCTGATGAGCTTCTCCTTCTTTCTTTATGGATTGCTCAGTGATGATGCCTTCATTTATGTACCAAATGGGATAGGAACTGTTTTAGGAATAATACAATTGGTATTATATTTCTATTATAAAGGTTCATCCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTACGAATGA

>Glyma15g27750.3   sequence type=CDS   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGTTTGGTGCTTACTCTATCTGTGAAGTTGGCAAGGATGCGGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGTTTGTTTGTGTCCCCCATACCGACATTTAGGAGAATCATCCGAAATGGGTCAACAGAAATGTTCTCCGGGTTGCCATATATTTATTCTCTCTTGAACTGCATGATCTGCTTGTGGTATGGCACACCCCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCTATTGGAGCAGCCTTTCAGCTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGCAATGCGCCGGATGTTTGTCGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTAGTGATTCGGACAAAAAGTATTGAGTTTATGCCGTTTTATCTTTCACTTTCCACCTTCCTGATGAGCTTCTCCTTCTTTCTTTATGGATTGCTCAGTGATGATGCCTTCATTTATGTACCAAATGGGATAGGAACTGTTTTAGGAATAATACAATTGGTATTATATTTCTATTATAAAGGTTCATCCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTACGAATGA

>Glyma15g27750.4   sequence type=CDS   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGTTTGGTGCTTACTCTATCTGTGAAGTTGGCAAGGATGCGGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGTTTGTTTGTGTCCCCCATACCGACATTTAGGAGAATCATCCGAAATGGGTCAACAGAAATGTTCTCCGGGTTGCCATATATTTATTCTCTCTTGAACTGCATGATCTGCTTGTGGTATGGCACACCCCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCTATTGGAGCAGCCTTTCAGCTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGCAATGCGCCGGATGTTTGTCGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTAGTGATTCGGACAAAAAGTATTGAGTTTATGCCGTTTTATCTTTCACTTTCCACCTTCCTGATGAGCTTCTCCTTCTTTCTTTATGGATTGCTCAGTGATGATGCCTTCATTTATGTACCAAATGGGATAGGAACTGTTTTAGGAATAATACAATTGGTATTATATTTCTATTATAAAGGTTCATCCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTACGAATGA

Predicted protein sequences of Glyma15g27750

Limit To All Plant Sequences

>Glyma15g27750.2   sequence type=predicted peptide   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFGAYSICEVGKDAAGVAGNIFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCMICLWYGTPLISPDNLLVTTVNSIGAAFQLVYIILFLMYAEKARKVRMVGLLLAVLGIFVIILVGSLQIDDSAMRRMFVGFLSCASLISMFASPLFIIKLVIRTKSIEFMPFYLSLSTFLMSFSFFLYGLLSDDAFIYVPNGIGTVLGIIQLVLYFYYKGSSSEECREPLIVSYE*

>Glyma15g27750.3   sequence type=predicted peptide   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFGAYSICEVGKDAAGVAGNIFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCMICLWYGTPLISPDNLLVTTVNSIGAAFQLVYIILFLMYAEKARKVRMVGLLLAVLGIFVIILVGSLQIDDSAMRRMFVGFLSCASLISMFASPLFIIKLVIRTKSIEFMPFYLSLSTFLMSFSFFLYGLLSDDAFIYVPNGIGTVLGIIQLVLYFYYKGSSSEECREPLIVSYE*

>Glyma15g27750.4   sequence type=predicted peptide   gene model=Glyma15g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFGAYSICEVGKDAAGVAGNIFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCMICLWYGTPLISPDNLLVTTVNSIGAAFQLVYIILFLMYAEKARKVRMVGLLLAVLGIFVIILVGSLQIDDSAMRRMFVGFLSCASLISMFASPLFIIKLVIRTKSIEFMPFYLSLSTFLMSFSFFLYGLLSDDAFIYVPNGIGTVLGIIQLVLYFYYKGSSSEECREPLIVSYE*

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